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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009111638.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
NAC |
Protein Properties |
Length: 446aa MW: 50303.8 Da PI: 6.3285 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009111638.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 162.7 | 1.4e-50 | 9 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
lp+GfrF+Ptdeelv +yL++k++g++ ++ +vi+ vdi+k+ePwdLp + v+++++ew fF++ d+ky++g+r nrat +gyWkatgkd++v+
XP_009111638.1 9 LPVGFRFSPTDEELVRYYLRQKINGRDDDV-RVIRAVDICKYEPWDLPdlSVVRTTDSEWLFFCPLDRKYPSGSRMNRATVAGYWKATGKDRKVK 102
79*************************999.99**************96447788999************************************* PP
NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
s +++ +g+k+tLvfy+grapkg++t W+mheyr+
XP_009111638.1 103 SGSTKIIGVKRTLVFYTGRAPKGTRTCWIMHEYRA 137
*99999***************************96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0002230 | Biological Process | positive regulation of defense response to virus by host |
GO:0002237 | Biological Process | response to molecule of bacterial origin |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0003713 | Molecular Function | transcription coactivator activity |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 446 aa
Download sequence Send
to blast |
MEVLSLDALP VGFRFSPTDE ELVRYYLRQK INGRDDDVRV IRAVDICKYE PWDLPDLSVV 60 RTTDSEWLFF CPLDRKYPSG SRMNRATVAG YWKATGKDRK VKSGSTKIIG VKRTLVFYTG 120 RAPKGTRTCW IMHEYRATEK DLDGTKPGQN PFVICKLFKK QDVVSEASPE CGVEPAVSSP 180 TVVDEMRSEV ELSEVSLAFP TKEEPKHSTD VSGECQSDIS APEVTTNEQL DHIDWSSYLE 240 FESLDHTMFS PLHSQVQSEL GSAFNGFQYG STEPFRNQND PHIQTQYGSN DPDQYMFDLL 300 DSTFQIPYEL PEMKHLAQPT QEQILYEPQS LVNKINNDVS ETGIKIRTRR AQAQGCAEQF 360 VMQGNASRRL RLQVNHNSPK PETDSIKKEV KETTKGCGSF MRSKSSSEFI LKKVAAMGCS 420 YRGILKAGVV AVVFAMSVCS LTGQFR
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 1e-44 | 4 | 161 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-44 | 4 | 161 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-44 | 4 | 161 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-44 | 4 | 161 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-44 | 4 | 161 | 12 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-44 | 4 | 161 | 12 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator essential for the anti-viral defense called virus basal resistance response pathway (PubMed:11041886, PubMed:15629774, PubMed:18785827, PubMed:24418554). Not involved in HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Binds DNA non specifically (PubMed:15629774). Activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). {ECO:0000250|UniProtKB:Q9SCK6, ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774, ECO:0000269|PubMed:18785827, ECO:0000269|PubMed:24418554}.; FUNCTION: (Microbial infection) Compromised function in defense response pathway when interacting with the invading viral capsid protein (CP) of turnip crinkle virus (TCV) due to abnormal subcellular localization. {ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by bacterial pathogens type III effector proteins (TTEs). {ECO:0000269|PubMed:16553893}.; INDUCTION: (Microbial infection) Accumulates 2 days post infection with turnip crinkle virus (TCV) (PubMed:24418554). {ECO:0000269|PubMed:24418554}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ420440 | 0.0 | KJ420440.1 Brassica napus NAC transcription factor 91-1 (NAC91-1.1) mRNA, complete cds. |