PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009111529.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 393aa MW: 43050.7 Da PI: 7.5836

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009111529.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.5	7.5e-16	210	255	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq XP_009111529.1 210 HNQTERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 255 9**********************8.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.93E-18	203	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.796	205	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-13	210	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-17	210	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.39E-16	210	259	No hit	No description
SMART	SM00353	3.7E-17	211	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MSQRVPYCHI DDSPAATVGS TKAAYIPMLN YEVAELTWEN GQLGLNSLGP TQVPAPSKNL 60 RGAGGTLESI VDQATRFPNP KPTDELVPWF HHRSSRAGLD ALVPEQQSQP DTHVDSCSNG 120 HPMAGGKRAR VASEWSTGGS QNLTFETYGF TSTSLDDNSS SGGKPCTKTT TIYDHDSVCH 180 SRRQMEEEEE KQAGGKSPVP TKRSRAAAIH NQTERKRRDK INQRMKTLQK LVPNSSKTDK 240 ASMLDEVIEY LKQLQAQVSM MCRMNLPSMM LPMAMQQQQQ QLQLSLMSSS MGLGLGMGMP 300 ALGLLDLNSM NRAAATAPNI HANMMPNPFV PMTSPPWDAS SSTDTLFQSP LTHDTMPAFL 360 SCSSQQTTME AYSRMAALYQ QMQQQIPPPS SPK

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MSQRVPYCHI DDSPAATVGS TKAAYIPMLN YEVAELTWEN GQLGLNSLGP TQVPAPSKNL  60
RGAGGTLESI VDQATRFPNP KPTDELVPWF HHRSSRAGLD ALVPEQQSQP DTHVDSCSNG  120
HPMAGGKRAR VASEWSTGGS QNLTFETYGF TSTSLDDNSS SGGKPCTKTT TIYDHDSVCH  180
SRRQMEEEEE KQAGGKSPVP TKRSRAAAIH NQTERKRRDK INQRMKTLQK LVPNSSKTDK  240
ASMLDEVIEY LKQLQAQVSM MCRMNLPSMM LPMAMQQQQQ QLQLSLMSSS MGLGLGMGMP  300
ALGLLDLNSM NRAAATAPNI HANMMPNPFV PMTSPPWDAS SSTDTLFQSP LTHDTMPAFL  360
SCSSQQTTME AYSRMAALYQ QMQQQIPPPS SPK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	213	218	ERKRRD
2	214	219	RKRRDK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Required during the fertilization of ovules by pollen. {ECO:0000269\|PubMed:15634699}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009111529.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117229	0.0	AK117229.1 Arabidopsis thaliana At4g00050 mRNA for putative bHLH transcription factor (bHLH016), complete cds, clone: RAFL16-78-C08.
GenBank	BT025971	0.0	BT025971.1 Arabidopsis thaliana At4g00050 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009111529.1	0.0	PREDICTED: transcription factor UNE10-like
Refseq	XP_022569646.1	0.0	transcription factor UNE10-like
Swissprot	Q8GZ38	1e-172	UNE10_ARATH; Transcription factor UNE10
TrEMBL	A0A3P5XT61	0.0	A0A3P5XT61_BRACM; Uncharacterized protein
STRING	XP_006396204.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3919	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	1e-170	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]