 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009111480.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
bHLH |
| Protein Properties |
Length: 542aa MW: 61579.3 Da PI: 5.549 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009111480.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 15.7 | 2.6e-05 | 369 | 402 | 17 | 55 |
HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
N++f+ L+ ++P+ + ++K eiL +++Y+++L+
XP_009111480.1 369 NEKFSVLKAMVPTvN------QVDKEEILNNTIKYLQELE 402
9************66......7***************995 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 542 aa
Download sequence Send
to blast |
MAGGVEAASG RSKSKNNLLR KQLAVALRSV QWSYAIFWSS SLTQHGVLEW EEGCYNGDIK 60
KRKKSYEAAQ YKYALQRSNQ LRKLYLCMLE GDSNTTISTT HDVDDYGDDE EHNCNSTTSM 120
MLSPDDLSDE EWYYIVSMSY VFSPSQCLPG RALVTGETIW LCNAQYADNK LFSRSLLARS 180
ASIQTVVCFP YLGGVIELGV TELISEDHSL LQHIKSCLLE TSKPDCASYT FSARRDSDDE 240
KYQTKIKTSD GNSNSVLQGN HQIQSDEDVH YKRTVSTLLK YAADKDIPHL QPDLVSTNIE 300
SSFLRWKQRE QPNSILFQEH SNLQTLSQNV LRKILQDVPL MHSLDTKRTL PSKTFGLNQD 360
DPWDTRKENE KFSVLKAMVP TVNQVDKEEI LNNTIKYLQE LEGRVEELES CMGSVNFAER 420
QRKSVNDSVL IEETSGNYDE STKIDGNSGE TEQVTIVRDE THLRVKLKET EVVMEVRCSY 480
RDYIVADIME TLSKLHMDAF SVRSYTLNGF LTLNLKAKFR GAAVASVGMI KRELRRVIGE 540
II
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4rqw_A | 2e-11 | 19 | 218 | 9 | 192 | Transcription factor MYC3 |
| 4rqw_B | 2e-11 | 19 | 218 | 9 | 192 | Transcription factor MYC3 |
| 4rs9_A | 2e-11 | 19 | 218 | 9 | 192 | Transcription factor MYC3 |
| 4yz6_A | 2e-11 | 19 | 218 | 9 | 192 | Transcription factor MYC3 |
| Search in ModeBase |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Mostly expressed in developing seeds. Also detected in stems and leaves. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:8980509}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Trancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
