PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111465.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 283aa    MW: 31791.5 Da    PI: 8.6299
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111465.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.6e-08755254
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    +  +  rE+ RR+++N+ f eL  +l +      +K++Ka+iL+ + + +k+L
  XP_009111465.1  7 KSQKAGREKLRREKLNEHFVELGNVLDPE----RPKNDKATILTDTLQLLKEL 55
                    5566779******************9987....69***********9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.817555IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-12578IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-12571IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-4659No hitNo description
PfamPF000107.0E-6755IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-51161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDVSARKSQK AGREKLRREK LNEHFVELGN VLDPERPKND KATILTDTLQ LLKELTSEVN  60
KLKSEYTALT DESRELTQEK NDLREEKTSL KSDIENLNLQ YQQRLRSMSP WGAAMDHTIM  120
MAPPPSFPYP MPMAMPPGSI PMHHPPMPSY TYFGNQNPSM MPAPYMPYMP PNTVVEQQSV  180
HIPQNNRSRE PRAKVSRESR SDKAEDSNDV ATQLELKTPG STSDKDTSQR PEKSKRCKRN  240
SNNNNNSVEE SSHSSKCSSS PSVRDNTSSS SVSGGGLKPD DAK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.145500.0bud| leaf| root| silique
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111465.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3175070.0AK317507.1 Arabidopsis thaliana AT3G19860 mRNA, complete cds, clone: RAFL25-09-J11.
GenBankAY0651070.0AY065107.1 Arabidopsis thaliana unknown protein (At3g19860; MPN9.10) mRNA, complete cds.
GenBankAY0817030.0AY081703.1 Arabidopsis thaliana unknown protein (At3g19860) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111465.10.0PREDICTED: transcription factor bHLH121
SwissprotQ9LT231e-159BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A078HXZ00.0A0A078HXZ0_BRANA; BnaA01g25810D protein
TrEMBLM4FAX10.0M4FAX1_BRARP; Cytosolic Fe-S cluster assembly factor NBP35
STRINGBra038236.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-130bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]