PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009111381.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 311aa MW: 34836.4 Da PI: 6.4125

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009111381.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.1	2.1e-15	108	159	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P+ ++ + a+i+ A++YIk+L+ XP_009111381.1 108 QRMTHIAVERNRRRQMNEHLNSLRSLMPPT---FLQRGDQASIVGGAIDYIKELE 159 79*************************9...89***************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.79E-13	106	163	No hit	No description
SuperFamily	SSF47459	2.62E-17	107	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.24	107	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.0E-15	108	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.2E-13	108	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-12	113	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MEGLMRFGGL EEQFSHISEN AINEKTPFLQ MLQCIEPEPN QILQSLLQSQ TLEPESCLTL 60 ETIKRDPGLE EDPVKDPKIE DGAEAKVKEK RKRKRTRAPK NKDEVESQRM THIAVERNRR 120 RQMNEHLNSL RSLMPPTFLQ RGDQASIVGG AIDYIKELEQ LLQSLEAEKH SEGASENPKA 180 ASSYSSSSSR ACTNSSVSSI SPTSEDGFTA RFGGGETAEV EATVIQNHVS LKVRCKRGRG 240 QILRAIISIE NLKLSILHLT ISTSFDFVFY SFNLKIEEGC KVRSADEIAT AVHQIFEQIN 300 GVMMWSNLSR A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	119	RMTHIAVERNRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.8951	0.0	bud\| flower\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009111381.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009111381.1	0.0	PREDICTED: transcription factor bHLH57
Swissprot	Q9M128	1e-157	BH057_ARATH; Transcription factor bHLH57
TrEMBL	A0A078IKX8	0.0	A0A078IKX8_BRANA; BnaA09g51970D protein
TrEMBL	M4F8K2	0.0	M4F8K2_BRARP; Uncharacterized protein
STRING	Bra037414.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14696	17	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01460.1	1e-130	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]