PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111343.1
Common NameWRKY47
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 490aa    MW: 53940.5 Da    PI: 6.793
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111343.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.2e-31235294159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  XP_009111343.1 235 VNDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDTTILTTTYEGNHNHP 294
                     58*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-33220296IPR003657WRKY domain
SuperFamilySSF1182907.85E-28228296IPR003657WRKY domain
PROSITE profilePS5081128.908230296IPR003657WRKY domain
SMARTSM007741.6E-37235295IPR003657WRKY domain
PfamPF031061.5E-26236294IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MEEHSQDGRE IAFLHSGDFL QRDSTSKDHQ PNESSVEHHH KPSIKEVDFF AVKSQPYDLG  60
HMRTTIVGSS SFNSELAPVN SCLRTSSDDD GNDKTKAQIS RLRLELERLH EENHKLKHLL  120
DEISERYNDL QSRVLLARPT QVEGLQQHED IPQAVSSQAL EDRKPMDMNN DIPATTLKRR  180
SPDDVDDRDH RDSPKAPRLY QNKSTNHEEQ QNPHDQLPFR KARVSVRARS DATTVNDGCQ  240
WRKYGQKMAK GNPCPRAYYR CTMAVGCPVR KQVQRCAEDT TILTTTYEGN HNHPLPPSAT  300
AMAATTSAAA AMLLSGSNTS NFHQTLSTPS AMSSSSSSLY QNFPYTSTIA TLSATAPFPT  360
ITLDLTNPPR PLQPPPPPHF MSQYGPGAYL TNANQTRSIN DNYQQLLLPN LSGPQVPRDM  420
VDTVRAAIAT DPNFTAALAA AISNIIGGGN NNNNANTNDN NNNKVDAKSG GSSNGDSPPL  480
PQSCTTFSTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21222297175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111343.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300580.0KF430058.1 Brassica rapa WRKY transcription factor 47 (WRKY47) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288912.10.0probable WRKY transcription factor 47
RefseqXP_013726314.10.0probable WRKY transcription factor 47
SwissprotQ9ZSI70.0WRK47_ARATH; Probable WRKY transcription factor 47
TrEMBLA0A078G9D70.0A0A078G9D7_BRANA; BnaA09g00350D protein
TrEMBLM4F5F90.0M4F5F9_BRARP; Uncharacterized protein
TrEMBLV5RG650.0V5RG65_BRACM; WRKY transcription factor 47
STRINGBra036315.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.10.0WRKY family protein
Publications ? help Back to Top
  1. Tang J, et al.
    Characterization and co-expression analysis of WRKY orthologs involved in responses to multiple abiotic stresses in Pak-choi (Brassica campestris ssp. chinensis).
    BMC Plant Biol., 2013. 13: p. 188
    [PMID:24267479]