PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111272.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 304aa    MW: 32479.1 Da    PI: 6.1695
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111272.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.4e-09150194554
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P+ +      K + a++  + v+Y+k L
  XP_009111272.1 150 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 194
                     99***********************55......9**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-14143204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-14147204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-6150194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-10151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MASNNNNPHE NLSDQTPSDD FFEQILGLPN FSASSSDGGL GGGGGGGAPL MMLQLGSGEE  60
XGHMGGLXGG SGFNNQMFPL GLSHEQGKGQ GFLRTEGGSL GTGKRFSDDV MKPVFHGQPM  120
QQQPAPAAPH QPTSIRPRVR ARRGQATDPH SIAERLRRER IAERIRALQE LVPTVNKTDR  180
AAMIDEIVDY VKFLRLQVKV LSMSRLGGAG AVAPLVTDMP LSSSVEDESG EGGRAPQPAW  240
EKWSNDGTER QVAKLMEENV GAAMQLLQSK ALCMMPISLA MAIYHSQPPD TSSVVKPETN  300
PPPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154159RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.181910.0flower| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111272.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527650.0AK352765.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-G01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111272.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor UNE12
SwissprotO227681e-168UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A078GAL60.0A0A078GAL6_BRANA; BnaA09g00910D protein
TrEMBLA0A397XQ390.0A0A397XQ39_BRACM; Uncharacterized protein
STRINGXP_006396471.11e-170(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-134bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]