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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009111204.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
B3 |
Protein Properties |
Length: 354aa MW: 39942.3 Da PI: 7.0174 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009111204.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 98.2 | 5.2e-31 | 54 | 152 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsef 90
f+kv tpsdv+k++rlv+pk++ae++ ++++++++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g++++
XP_009111204.1 54 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVITKGWSRFVKEKKLDAGDIVSFQRGiGDESK 148
89***************************966677889*************************************************55466555 PP
..EE CS
B3 91 elvv 94
+l++
XP_009111204.1 149 RLKL 152
4443 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MDLSLAPATN SDQEQDRDQE LNSNIGATSS SSGTANNTNF PMMMIPPPEK EHMFDKVVTP 60 SDVGKLNRLV IPKQHAERYF PLDSSNNQNG TLLNFQDRNG KMWRFRYSYW NSSQSYVITK 120 GWSRFVKEKK LDAGDIVSFQ RGIGDESKRL KLYIDWRHRP NMMSVAQTHN QFGNFGFNFN 180 FPTTSQCFNR FHPLPEYNTV PIHRSLNHQR SYYYNNHGQE FVGYVYGNLA GRCYYTGGSP 240 FDQRSIVGSE PLVIESVPVV PGRLTPVILP PLPPPSMAGK RLRLFGVNME CGNNDNNQQE 300 ESWVLPRGEM GASSSSSALR LNLSSDHDDE DDNGDGDGDG GDQFAKKGKS SRFL
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 1e-61 | 48 | 162 | 2 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-61 | 48 | 162 | 2 | 116 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Regulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}. |