PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111033.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 183aa    MW: 20715.8 Da    PI: 8.7771
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111033.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.56.3e-0537761054
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    ++R d+  ++++ L++++ +      +K + a++L+ A +YI  L
  XP_009111033.1 37 KQRKDKAGDRISALQQIVSPY-----GKTDTASVLQDALHYIEFL 76
                    78999999**********999.....9***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.7472776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-72781IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-103595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.74E-43781No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MEFSREAGMM MENKQNVCSL EENSIKRHKS DLSFSSKQRK DKAGDRISAL QQIVSPYGKT  60
DTASVLQDAL HYIEFLHEQV KVCPFLFISV QYHYHLPTMI LSSSYLRKRH VLLVQVLSAP  120
YLQTMTAATQ EELEQYSLRN RGLCLVPMEY TAGVAQSNGA DIWAPVKTPP SPAFGVKSQS  180
PFR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.172331e-137flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111033.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892291e-117AC189229.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB013C03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111031.11e-136PREDICTED: transcription factor bHLH113-like isoform X1
RefseqXP_009111032.11e-136PREDICTED: transcription factor bHLH113-like isoform X1
RefseqXP_009111033.11e-136PREDICTED: transcription factor bHLH113-like isoform X1
SwissprotQ7XJU22e-88BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A3P6F7S51e-132A0A3P6F7S5_BRAOL; Uncharacterized protein
STRINGBo8g005780.14e-96(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.22e-98bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]