PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009111007.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 381aa MW: 42569.3 Da PI: 6.2965

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009111007.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.8	3.1e-10	185	241	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l XP_009111007.1 185 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLTLLQRDTNGLSV 241 9*******************************************9999877766655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.0E-15	181	245	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.714	183	246	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.74E-11	185	236	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.6E-10	185	239	No hit	No description
Pfam	PF00170	6.3E-9	185	237	IPR004827	Basic-leucine zipper domain
CDD	cd14703	7.64E-24	186	235	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MDKEKPSGLP PPHPPGRYSA FTPNAMKPES SFPHITPSGS SSDANRFSHD ISLMSDNPPK 60 NLGHRRAHSE ILTLPDDLSF DSDLGVVGAA AADGPSFSDD TDEDLLSMYL DMDKFNSSEA 120 SSSQMCEQPS EPAWNERPRV RHQHSQSMDG TTSIKPEMLM SGSNEDAKKA LSAAKLSELA 180 LIDPKRAKRI WANRQSAARS KERKMRYIAE LERKVQTLQT EATTLSAQLT LLQRDTNGLS 240 VENNELKLRV QSMEQQFHLQ DALNEALKEE VQHLKVLTGQ GVSNGASMMN YGGSFGSNQQ 300 FYPNNQSRHT MLAAQQFQQL QIQSQKQQQQ QLHQQQMYQL QQQRIQQQEQ QSGVTELRRP 360 MSSSGLKESV TSDPEATLTK D

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MDKEKPSGLP PPHPPGRYSA FTPNAMKPES SFPHITPSGS SSDANRFSHD ISLMSDNPPK  60
NLGHRRAHSE ILTLPDDLSF DSDLGVVGAA AADGPSFSDD TDEDLLSMYL DMDKFNSSEA  120
SSSQMCEQPS EPAWNERPRV RHQHSQSMDG TTSIKPEMLM SGSNEDAKKA LSAAKLSELA  180
LIDPKRAKRI WANRQSAARS KERKMRYIAE LERKVQTLQT EATTLSAQLT LLQRDTNGLS  240
VENNELKLRV QSMEQQFHLQ DALNEALKEE VQHLKVLTGQ GVSNGASMMN YGGSFGSNQQ  300
FYPNNQSRHT MLAAQQFQQL QIQSQKQQQQ QLHQQQMYQL QQQRIQQQEQ QSGVTELRRP  360
MSSSGLKESV TSDPEATLTK D

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.22984	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009111007.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189229	0.0	AC189229.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB013C03, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009111007.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-156	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	M4EPB7	0.0	M4EPB7_BRARP; Uncharacterized protein
STRING	Bra030637.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2445	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-147	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]