PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009110996.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 198aa MW: 22607.2 Da PI: 10.093 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 110.7 | 1e-34 | 21 | 112 | 1 | 92 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCa+Ck++r+kC+++C+l+pyfpa+++k+f++vhk+FG+snv+k++++++ee+r+++ +sl++eA +r++dPv G++g +++++++l+ k+ XP_009110996.1 21 ACASCKHQRKKCNNECILSPYFPARKNKEFQAVHKVFGVSNVQKMVRTVREEDRTKLSESLTWEALWRQKDPVLGSYGEYRRISEELKVYKS 112 7***********************************************************************************99988775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.867 | 20 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-32 | 21 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MMQRNSNNNN NISNNPSSHQ ACASCKHQRK KCNNECILSP YFPARKNKEF QAVHKVFGVS 60 NVQKMVRTVR EEDRTKLSES LTWEALWRQK DPVLGSYGEY RRISEELKVY KSLVHNQPLI 120 GWDNNQRVLN NNNKNGLAVN SSGSGGFTVN NNGVGVNRDV INGGYLSRSG YENLRQDQRQ 180 QCYAVINGFK QHYLPLSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-18 | 13 | 98 | 3 | 88 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-18 | 13 | 98 | 3 | 88 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.21019 | 0.0 | bud| flower |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009110996.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009110996.1 | 1e-145 | PREDICTED: LOB domain-containing protein 2 | ||||
Swissprot | Q9LNB9 | 1e-111 | LBD2_ARATH; LOB domain-containing protein 2 | ||||
TrEMBL | M4EPC7 | 1e-143 | M4EPC7_BRARP; Uncharacterized protein | ||||
STRING | Bra030647.1-P | 1e-143 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10539 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 6e-85 | LOB domain-containing protein 2 |