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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009110972.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
bZIP |
| Protein Properties |
Length: 320aa MW: 35362.1 Da PI: 5.2318 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009110972.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 30.4 | 8.4e-10 | 132 | 181 | 5 | 54 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54
kr++r NR +A rs +RK +i+eLe++v++L++e ++L +l +
XP_009110972.1 132 KRAKRILANRQSAARSKERKARYIQELERRVQSLQTEATTLSAQLTLFQR 181
9****************************************998876665 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005829 | Cellular Component | cytosol |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 320 aa
Download sequence Send
to blast |
MDKPDPPPNP NADPVPSSFH RRTRSDDMSM FMFTDPLSSA APPSSDDLPS DDDLFSSFID 60
VDSLSSNPNP PISFPDPSSA AVPPPNSSSR PRHRHSNSVD AGCAMYAGDE IMDAKKAMPP 120
EKLSELWSVD PKRAKRILAN RQSAARSKER KARYIQELER RVQSLQTEAT TLSAQLTLFQ 180
RDTNGLANEN TELKMRLQAM EQQAHLRNAL NEALRKEVER MKMETGEISG NSDSFDMGMQ 240
QVQYSPSTFM AIPPYHHGSI NNGQDMQQMR GFNQMSNSQS VSEFLQNGRL QGLEISSNNS 300
SSLVKSEGPS LSGSESSSAY
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269|PubMed:27896439}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC011001 | 2e-47 | AC011001.2 Arabidopsis thaliana chromosome I BAC F4H5 genomic sequence, complete sequence. |
| GenBank | AJ419852 | 2e-47 | AJ419852.1 Arabidopsis thaliana mRNA for AtbZIP transcription factor. |
| GenBank | AJ419853 | 2e-47 | AJ419853.1 Arabidopsis thaliana mRNA for AtbZIP transcription factor. |
| GenBank | AY062474 | 2e-47 | AY062474.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850; F4H5.7) mRNA, complete cds. |
| GenBank | BT000102 | 2e-47 | BT000102.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850) mRNA, complete cds. |
| GenBank | CP002684 | 2e-47 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Pawar V, et al.
A novel family of plant nuclear envelope-associated proteins.
J. Exp. Bot., 2016. 67(19): p. 5699-5710
[PMID:27630107] - Gibalová A, et al.
Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
Plant Reprod, 2017. 30(1): p. 1-17
[PMID:27896439] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470] - Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
[PMID:9356517]
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