PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009110913.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 283aa    MW: 31568.6 Da    PI: 9.0369
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009110913.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.4e-20202236135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C tt+Tp+WR+gp+g+ktLCnaCG+++r+ +l
  XP_009110913.1 202 CTHCETTETPQWREGPSGPKTLCNACGVRFRSGRL 236
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.6E-19196246IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.532196232IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.85E-15199259No hitNo description
Gene3DG3DSA:3.30.50.101.6E-15200233IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.93E-17201258No hitNo description
PROSITE patternPS003440202227IPR000679Zinc finger, GATA-type
PfamPF003204.2E-18202236IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MNWLLPEEGL SDDLFGDLFN SVELSLQDID DDDTTNGEVE DWEAKFQHLE PPPMDVFTSF  60
PTEFTSSCRV NKLGRVGTVP VLKQSGACAA LSGTSPHKFS SPADDIKVSK MFQSLSPVSV  120
FESSDASFSP HNTRSQKLTS PVKGMRSKRK RPTTVRFKYL HQFEASKPEM LAPGESGLRT  180
YYAFEQHAKK GRKISSQVAR KCTHCETTET PQWREGPSGP KTLCNACGVR FRSGRLVPEY  240
RPASSPTFVP SVHSNSHRKI IEMRRKEGGQ FHTSMIHGVI SRA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009110913.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895180.0AC189518.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB090M17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110913.10.0PREDICTED: GATA transcription factor 11-like
SwissprotQ6DBP81e-110GAT11_ARATH; GATA transcription factor 11
TrEMBLA0A397YQP60.0A0A397YQP6_BRACM; Uncharacterized protein
TrEMBLM4EPI90.0M4EPI9_BRARP; Uncharacterized protein
STRINGBra030709.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-113GATA transcription factor 11