PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009110746.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 312aa MW: 35969.4 Da PI: 5.7102

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009110746.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.9	6e-30	13	67	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrW+ eLH+rF++av+qLGG++kAtPk ++++++++ Ltl+h+kSHLQkYRl XP_009110746.1 13 KPRLRWSYELHHRFIDAVNQLGGPNKATPKGLMRVLEIPELTLYHLKSHLQKYRL 67 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-27	10	69	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-20	13	67	IPR006447	Myb domain, plants
SuperFamily	SSF46689	3.4E-14	13	70	IPR009057	Homeodomain-like
Pfam	PF14379	6.0E-19	113	159	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MDNDKNHKTE EPKPRLRWSY ELHHRFIDAV NQLGGPNKAT PKGLMRVLEI PELTLYHLKS 60 HLQKYRLGIS ERFIGNKQDA GRSQECQSQE DLGDQLDIIV PEEKHDEPNK NLQIKEAVEI 120 QMEVQKKLHE QIEMQQQLQV RIEAQGKYLQ SVLLKAQETL SGYKSSNLYA VASMANRNCL 180 SSSISALTQA DEDNEVEEEY DFLCTKKPEN RGNESTRSSV DCSLASSESS EAKLDHRSQT 240 IMRRSDELQF MEIKPEEVMD RKKRRWDDDV LCVEQSIRKK AFGGLDGEDL GLNLNSFKVM 300 ETSYKSNYKS NK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-17	13	66	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-17	13	66	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-17	13	66	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-17	13	66	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-17	13	66	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-17	13	66	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-17	13	66	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-17	13	66	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-17	13	66	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-17	13	66	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-17	13	66	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-17	13	66	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009110746.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189385	0.0	AC189385.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB052E19, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009110746.1	0.0	PREDICTED: myb family transcription factor PHL8-like isoform X2
Swissprot	F4I274	1e-91	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A3P6BKV6	0.0	A0A3P6BKV6_BRACM; Uncharacterized protein
TrEMBL	M4DIG2	0.0	M4DIG2_BRARP; Uncharacterized protein
STRING	Bra016289.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3878	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	3e-87	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]