 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009110521.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 298aa MW: 33353 Da PI: 10.0653 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009110521.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 342.3 | 1.2e-104 | 26 | 298 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd....maflqrdkalaernkalverdnkllalll 86
mdddg+ rn+gyyepa a++k nlglqlmss +r++k+ r+ nl ++++++++++ + m++ +++++ +++k++++l+
XP_009110521.1 26 MDDDGF--RNWGYYEPAaATFKGNLGLQLMSSA-DRNTKPflpgRDPNL-MIGQNGSYHHAEppihMSY----NWINQ-------QKDKFFNMLP 105
99**99..9*******999*************9.9**************.************5555555....*****.......899******* PP
GAGA_bind 87 venslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkke 181
v+++ p++ +vl++t+s+ s+++++++q+e+++v+ +eee +i++ +++ k+++ + ++++k kk +k+k+ ++++k++
XP_009110521.1 106 VTTT-----PNYGNVLPETSSAPSMHHHHHHQTEENPVKCEEEE-----EIVQPNKKRKTNS-----KASATAKGKKPRKPKE-----ENDSKTN 180
9986.....9****************************965555.....4444322222222.....3445666677777777.....2344455 PP
GAGA_bind 182 saderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG 276
+r+k kks+dlv+ngv++D+s+lPvPvC+CtGa++qCY+WG+G WqSaCCtt+iS++PLP+stkrrgaRi+grKmSqgafkk+LekL+++G
XP_009110521.1 181 V--SRVKPAKKSVDLVINGVNMDISGLPVPVCTCTGAPQQCYRWGCGSWQSACCTTNISMHPLPMSTKRRGARISGRKMSQGAFKKVLEKLSSDG 273
5..689***************************************************************************************** PP
GAGA_bind 277 ydlsnpvDLkdhWAkHGtnkfvtir 301
++++ p+DLk+hWA+HGtnkfvtir
XP_009110521.1 274 FNFGSPIDLKSHWARHGTNKFVTIR 298
************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 298 aa
Download sequence Send
to blast |
MLVPTRKCSY VGISYKSSLD FISLKMDDDG FRNWGYYEPA AATFKGNLGL QLMSSADRNT 60
KPFLPGRDPN LMIGQNGSYH HAEPPIHMSY NWINQQKDKF FNMLPVTTTP NYGNVLPETS 120
SAPSMHHHHH HQTEENPVKC EEEEEIVQPN KKRKTNSKAS ATAKGKKPRK PKEENDSKTN 180
VSRVKPAKKS VDLVINGVNM DISGLPVPVC TCTGAPQQCY RWGCGSWQSA CCTTNISMHP 240
LPMSTKRRGA RISGRKMSQG AFKKVLEKLS SDGFNFGSPI DLKSHWARHG TNKFVTIR
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in pollen grains, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
