PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009110193.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 383aa MW: 43759.8 Da PI: 6.4663

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009110193.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85	9.3e-27	80	174	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt+++v++Li+a+++++++++ + +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d++ XP_009110193.1 80 KWTDKMVKLLITAVSYIGDDSSMDGggrrkfaalQKKGKWKSVSKVMSERGYHVSPQQCEDKFNDLNKRYKKLNDILGRGtSCQVVENPKLLDSI 174 7************8888888643344556677********************************************669999999888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.4E-24	78	201	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MDGKLPQGVA VRGGASSYGG FDLQGPLSQH LQGLPFTMVS GQTCGHHLSE QHKGERESDD 60 DEQPSFNEEA TKGSPWQRVK WTDKMVKLLI TAVSYIGDDS SMDGGGRRKF AALQKKGKWK 120 SVSKVMSERG YHVSPQQCED KFNDLNKRYK KLNDILGRGT SCQVVENPKL LDSIGYLNDK 180 EKDDVRKIMS SKQLFYEEMC SYHNGNRLHL PHDFALQRSL QVALRSRDDQ HRVEDLDDED 240 HDGEGDEHDD DVDHGDCRVV GGPLKKARES HSHSHEGVDH QGHVNSLECN KVTLALPQGG 300 AESGRSASVQ KQWIESRTLQ LEEQKLQIQV ELLELEKQRF RWERFSKKRD QELERMRMEN 360 ERMKLENDRM GLELKQRVLG VEL

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MDGKLPQGVA VRGGASSYGG FDLQGPLSQH LQGLPFTMVS GQTCGHHLSE QHKGERESDD  60
DEQPSFNEEA TKGSPWQRVK WTDKMVKLLI TAVSYIGDDS SMDGGGRRKF AALQKKGKWK  120
SVSKVMSERG YHVSPQQCED KFNDLNKRYK KLNDILGRGT SCQVVENPKL LDSIGYLNDK  180
EKDDVRKIMS SKQLFYEEMC SYHNGNRLHL PHDFALQRSL QVALRSRDDQ HRVEDLDDED  240
HDGEGDEHDD DVDHGDCRVV GGPLKKARES HSHSHEGVDH QGHVNSLECN KVTLALPQGG  300
AESGRSASVQ KQWIESRTLQ LEEQKLQIQV ELLELEKQRF RWERFSKKRD QELERMRMEN  360
ERMKLENDRM GLELKQRVLG VEL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009110193.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY045850	4e-89	AY045850.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBank	AY091378	4e-89	AY091378.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBank	CP002684	4e-89	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F16F4	4e-89	AC036104.3 Sequence of BAC F16F4 from Arabidopsis thaliana chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009110193.1	0.0	PREDICTED: uncharacterized protein LOC103835755
Refseq	XP_013708471.1	0.0	uncharacterized protein LOC106412126
Refseq	XP_013708472.1	0.0	uncharacterized protein LOC106412126
Refseq	XP_013722062.1	0.0	uncharacterized protein LOC106425887
Refseq	XP_013722063.1	0.0	uncharacterized protein LOC106425887
Refseq	XP_018509348.1	0.0	PREDICTED: uncharacterized protein LOC103835755
TrEMBL	M4DIV2	0.0	M4DIV2_BRARP; Uncharacterized protein
STRING	Bra016429.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5042	27	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-180	sequence-specific DNA binding transcription factors