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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009110193.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
Trihelix |
Protein Properties |
Length: 383aa MW: 43759.8 Da PI: 6.4663 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009110193.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 85 | 9.3e-27 | 80 | 174 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85
+Wt+++v++Li+a+++++++++ + +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d++
XP_009110193.1 80 KWTDKMVKLLITAVSYIGDDSSMDGggrrkfaalQKKGKWKSVSKVMSERGYHVSPQQCEDKFNDLNKRYKKLNDILGRGtSCQVVENPKLLDSI 174
7**************8888888643344556677**********************************************669999999888765 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 383 aa
Download sequence Send
to blast |
MDGKLPQGVA VRGGASSYGG FDLQGPLSQH LQGLPFTMVS GQTCGHHLSE QHKGERESDD 60 DEQPSFNEEA TKGSPWQRVK WTDKMVKLLI TAVSYIGDDS SMDGGGRRKF AALQKKGKWK 120 SVSKVMSERG YHVSPQQCED KFNDLNKRYK KLNDILGRGT SCQVVENPKL LDSIGYLNDK 180 EKDDVRKIMS SKQLFYEEMC SYHNGNRLHL PHDFALQRSL QVALRSRDDQ HRVEDLDDED 240 HDGEGDEHDD DVDHGDCRVV GGPLKKARES HSHSHEGVDH QGHVNSLECN KVTLALPQGG 300 AESGRSASVQ KQWIESRTLQ LEEQKLQIQV ELLELEKQRF RWERFSKKRD QELERMRMEN 360 ERMKLENDRM GLELKQRVLG VEL
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY045850 | 4e-89 | AY045850.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds. |
GenBank | AY091378 | 4e-89 | AY091378.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds. |
GenBank | CP002684 | 4e-89 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
GenBank | F16F4 | 4e-89 | AC036104.3 Sequence of BAC F16F4 from Arabidopsis thaliana chromosome 1, complete sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G21200.1 | 1e-180 | sequence-specific DNA binding transcription factors |