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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009110048.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
NAC |
Protein Properties |
Length: 412aa MW: 46864.4 Da PI: 6.7547 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009110048.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 169 | 1.5e-52 | 16 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
l pGfrFhPtdeelv++yLk+k+++++l++ e i+++diyk++PwdLp k++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+
XP_009110048.1 16 LLPGFRFHPTDEELVSFYLKRKIQHNPLSI-ELIRQLDIYKYDPWDLP-KFATGEKEWYFYCPRDRKYRNSSRPNRVTGAGFWKATGTDRPIYSS 108
579***************************.89***************.777899***************************************9 PP
NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
+++ +glkk+Lvfykgra kg+ktdW+mhe+r+
XP_009110048.1 109 eGNKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRM 142
56667***************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 412 aa
Download sequence Send
to blast |
MEERNNDGDH KMEEVLLPGF RFHPTDEELV SFYLKRKIQH NPLSIELIRQ LDIYKYDPWD 60 LPKFATGEKE WYFYCPRDRK YRNSSRPNRV TGAGFWKATG TDRPIYSSEG NKCIGLKKSL 120 VFYKGRAAKG VKTDWMMHEF RMPSLSEPSP SSKRFFDSPV SPNDSWAICR IFKKTNTTTL 180 RAMPHSFVSS LPSETSIDTM SLSNTSHFSS EKILKTSSHF QVHHENMSST TKPSSSPTSH 240 VATINPFSYL DFTSYEKTTN VFNPVSSLDQ QYLTNLFLAT QETQPQFPRL ASSNEFPSFL 300 LNTSSSDSAF LGECTSQIDL SVMLAQEQCP ALVSLPQEYQ EKGNGEIKSM GGCNEDHHNH 360 CGTLMFGDTG PTVEENHRHH YQDMKHNMTL LESYYSSLSS SNGDLPVCFS TT
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 5e-54 | 16 | 178 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-54 | 16 | 178 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-54 | 16 | 178 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-54 | 16 | 178 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-54 | 16 | 178 | 20 | 172 | NAC domain-containing protein 19 |
3swm_B | 5e-54 | 16 | 178 | 20 | 172 | NAC domain-containing protein 19 |
3swm_C | 5e-54 | 16 | 178 | 20 | 172 | NAC domain-containing protein 19 |
3swm_D | 5e-54 | 16 | 178 | 20 | 172 | NAC domain-containing protein 19 |
3swp_A | 5e-54 | 16 | 178 | 20 | 172 | NAC domain-containing protein 19 |
3swp_B | 5e-54 | 16 | 178 | 20 | 172 | NAC domain-containing protein 19 |
3swp_C | 5e-54 | 16 | 178 | 20 | 172 | NAC domain-containing protein 19 |
3swp_D | 5e-54 | 16 | 178 | 20 | 172 | NAC domain-containing protein 19 |
4dul_A | 5e-54 | 16 | 178 | 17 | 169 | NAC domain-containing protein 19 |
4dul_B | 5e-54 | 16 | 178 | 17 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}. |
Uniprot | TISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}. |
Functional Description ? help
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Source |
Description |
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC189385 | 0.0 | AC189385.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB052E19, complete sequence. |