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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009110025.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 423aa MW: 47393.1 Da PI: 8.7278 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00068 | 366 | 388 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++F++ L H r+H XP_009110025.1 366 HECPICFRVFKSGQALGGHKRSH 388 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.93E-5 | 5 | 35 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.0E-4 | 6 | 32 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.28 | 9 | 31 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.221 | 9 | 36 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.9E-4 | 9 | 32 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 11 | 31 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.043 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.388 | 92 | 119 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.2E-4 | 94 | 116 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 366 | 388 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.2E-10 | 366 | 388 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.974 | 366 | 388 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 368 | 388 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MEQCQERKFV CRFCSKRFPC GKSLGGHIRT HMNHENSADS DEDELNNLRV DENGGNSSYG 60 LRENPKKNKR FVVQRSMMAL KHQQHQHQQQ LLYCRECGKG FPSSKALCGH MACHSEREKI 120 VMDSQSETEA SSSPIRRRSK RVVGGNIMNQ YGSASSDDTG IEPEQEEMAL SLMMMSRDSS 180 FKKGHNMVVN SLAESSDNYS VILETKSSSG EQLKKVDECC KKDNLGRVEN GDVMYESDNS 240 DSGYFRNGPK KLDSDVFVDD GFSNKAAMGF NSSQDKSLNR FKKEWSGTGS GRSATKYDLR 300 KSKRGFPCYG RKRTKYELAE SVYDSGDQLS LETESCADTI KIHSNKSIMV KKASGGGGAK 360 KKSKGHECPI CFRVFKSGQA LGGHKRSHFL GNHEHRTLVI QQQHQVAHEM HTLIDLNLPA 420 PID |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009110025.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189429 | 1e-130 | AC189429.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB066M16, complete sequence. | |||
GenBank | HM560966 | 1e-130 | HM560966.1 Brassica rapa subsp. chinensis C2H2 zinc finger transcription factor (MF20) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009110025.1 | 0.0 | PREDICTED: zinc finger protein ZAT9-like | ||||
Refseq | XP_009110026.1 | 0.0 | PREDICTED: zinc finger protein ZAT9-like | ||||
Refseq | XP_022545977.1 | 0.0 | zinc finger protein ZAT9-like | ||||
TrEMBL | M4DIF3 | 0.0 | M4DIF3_BRARP; Uncharacterized protein | ||||
STRING | Bra016280.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1900 | 21 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 0.0 | C2H2-like zinc finger protein |