PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009110023.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 282aa    MW: 31531.1 Da    PI: 8.0115
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009110023.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019931123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C+ C+k  ++  +L rHir H
  XP_009110023.1  9 YMCKFCNKKLPSGKSLGRHIRIH 31
                    89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.6E-5633IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.27E-6634No hitNo description
SMARTSM003550.012931IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.136936IPR007087Zinc finger, C2H2
PfamPF139120.021027IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS501579.162230253IPR007087Zinc finger, C2H2
SMARTSM003550.19230252IPR015880Zinc finger, C2H2-like
PfamPF139122.8E-8230252IPR007087Zinc finger, C2H2
PROSITE patternPS000280232252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEKMIEREYM CKFCNKKLPS GKSLGRHIRI HTNQYSLLSS SYNGKNNNNK RLADQREITA  60
LTQQQQQLCC RECGPTRKRS KKQFSSESFS NGSSSSSACE IDQEDKNTAL SLMMMSMDSR  120
GLTLVVNSLV AESSENNSDD DDDDNGAILS DSYSSDSDYF MNGPKRSDSD ISVDGCLRNN  180
GGEFGVKEGR SKYELRKSKR VVLPCYESDS CAVDTNSKKA ISANKNGKCH ECPFCFRVFK  240
SGQALGGHKR SHSFVNQEHR VKHKAAADMR IDLNLPAHDV EE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009110023.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110021.11e-168PREDICTED: zinc finger protein ZAT9-like
RefseqXP_022546500.11e-168zinc finger protein ZAT9-like
TrEMBLA0A078JBU71e-167A0A078JBU7_BRANA; BnaA08g19790D protein
TrEMBLA0A3P6BM631e-167A0A3P6BM63_BRACM; Uncharacterized protein
TrEMBLM4DIF11e-167M4DIF1_BRARP; Uncharacterized protein
STRINGBra016278.1-P1e-167(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.11e-42C2H2-like zinc finger protein