PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009109979.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 1505aa MW: 174065 Da PI: 5.6844

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009109979.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.4e-12	1346	1392	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+ +ErrRR riN fe Lr++lP++ K +Ka++L ++v+Y k+L XP_009109979.1 1346 KKHSDAERRRRLRINYQFEALRTILPNL-----IKQDKASVLGETVRYFKEL 1392 68***********************9.....6**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.23E-12	1334	1398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.497	1343	1392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-9	1346	1392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.73E-7	1346	1396	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.5E-12	1347	1396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.6E-12	1349	1398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1505 aa Download sequence Send to blast
MEKVYEELDE VKAANEKLRG DFRAKTELLE NLKKVQNKQL IEIQESRSVI EKQGFEYEEK 60 DREISELKRT NEDLQRCLRE KDSVLKRLNE VNDKLRADGE EKNSGFEEER RKLVLALDEA 120 SEKNIDLERK SNAYRAEIEG LKGSLAAAEK KKTEAEKTVR ALKEARGRDD VAVKLEEEKA 180 QVEEKLKWKK EQFKHLEEAY EKLNNTFKSR KKEWEEERST ILDEIYSLQT KVDSQIRISE 240 DLEKKLQMCN SVLTQEETRR KHLEIEVSEL KAKYEDTFAE CRDARTQLDE LVGKRDEEVA 300 ELRHSLSTKE AYFKEMKYEN GKLEQENREL LASLRELQEA TIQGSGSSAL SKLKSKFRNL 360 ENVHKNCSAN LRSRESEWRS QLEKMAEEMS DYKSQLGSKD AAVNELELEL ENFHSSADKM 420 RLQYEEISVM FLVLSRTVSE AQSRLVNVTD EQTKHERSKE KRCSILIEEL EQKSVALAKA 480 REETEAERER VACLLKRVET LDHFEEQNLQ MQKEVERYRQ TVEESSKLQT QMKEKLKEAD 540 IDFQEKLLQV CDALDNTNSD LIAERERVMN LTRQIESFGV VKEKNLVMEK ELQKHKEMLE 600 ESEKRRMVLE ELESNSKENI RELCSKVDTA YAKLAEEVEK NVSLIRKIES IDQNEEQRHR 660 ELESYKERLE KATKSQTLLQ EKVVEVESHS KRKLAEVSED LEAANCELSD KTSEAYQLEF 720 QLWVWKSIAK RLKVELEQNQ NLRKRVEASL LEQVTLGDAM RQERNELVNK LKAAARSDSE 780 KEILIKIMRE KDKNLEEVQR EVDLLEQESL TRELEDAVFA HITAEKVLQN ERDELESSLK 840 SVSLLLEQKQ NEATMVYNAW EKLAADRILT EVETEAKKLM IIELEEDISS ISQKLERSDE 900 YVSCLRVELE SKQGELKEVT TQMQERLRTS EADKTELVKQ VTSLSSERQD LLCFISELEN 960 GMSKQCDEDT KLMKALEKTV QHYDGFGKEN NNVGSPRLVM KHEDVAVEDR SPFRQLNHXT 1020 KVTVGSQCHT LLDMRDFTGA RSLVKMNKQL GKDWQKLDQV EAICDVIIAA ENRLPNGFMD 1080 YYGMLRATRF GPVVLDDFRR LMKLLDWRCN GLPSSQEAAQ YAYQAWSMLS KPVMKARYDL 1140 DISSPMVRGN NHVGVAQLGF PEGSSFVLKE QSPNQDIGRG NDNEVVVISD DDDDGDEDII 1200 TMARTAKVFK INGKRVKFIP LKKKKRKDSS TSNVRKTYNK TKKIVIFIFL ENLNLYCFWS 1260 LYLYTTSLHC FYRSLLSLGV AMVLLQQLEQ GMRPLSQRYN ATAYSATIGR NFFTNGASSS 1320 NLFTSRGYSA NAKPKSKTES KEMAAKKHSD AERRRRLRIN YQFEALRTIL PNLIKQDKAS 1380 VLGETVRYFK ELKKLVNEIP TTPSLEDSLR LGQCKNRDFA RVVFNCSDRE GLMSEVAESM 1440 KAADAKAVRA EMMTVGGRTK CVLFVQGVNG NEGLVKLKKA LKPVVNRKLE AENNNNAGSL 1500 LPQQQ

Sequence ? help Back to Top

Protein Sequence Length: 1505 aa Download sequence Send to blast

MEKVYEELDE VKAANEKLRG DFRAKTELLE NLKKVQNKQL IEIQESRSVI EKQGFEYEEK  60
DREISELKRT NEDLQRCLRE KDSVLKRLNE VNDKLRADGE EKNSGFEEER RKLVLALDEA  120
SEKNIDLERK SNAYRAEIEG LKGSLAAAEK KKTEAEKTVR ALKEARGRDD VAVKLEEEKA  180
QVEEKLKWKK EQFKHLEEAY EKLNNTFKSR KKEWEEERST ILDEIYSLQT KVDSQIRISE  240
DLEKKLQMCN SVLTQEETRR KHLEIEVSEL KAKYEDTFAE CRDARTQLDE LVGKRDEEVA  300
ELRHSLSTKE AYFKEMKYEN GKLEQENREL LASLRELQEA TIQGSGSSAL SKLKSKFRNL  360
ENVHKNCSAN LRSRESEWRS QLEKMAEEMS DYKSQLGSKD AAVNELELEL ENFHSSADKM  420
RLQYEEISVM FLVLSRTVSE AQSRLVNVTD EQTKHERSKE KRCSILIEEL EQKSVALAKA  480
REETEAERER VACLLKRVET LDHFEEQNLQ MQKEVERYRQ TVEESSKLQT QMKEKLKEAD  540
IDFQEKLLQV CDALDNTNSD LIAERERVMN LTRQIESFGV VKEKNLVMEK ELQKHKEMLE  600
ESEKRRMVLE ELESNSKENI RELCSKVDTA YAKLAEEVEK NVSLIRKIES IDQNEEQRHR  660
ELESYKERLE KATKSQTLLQ EKVVEVESHS KRKLAEVSED LEAANCELSD KTSEAYQLEF  720
QLWVWKSIAK RLKVELEQNQ NLRKRVEASL LEQVTLGDAM RQERNELVNK LKAAARSDSE  780
KEILIKIMRE KDKNLEEVQR EVDLLEQESL TRELEDAVFA HITAEKVLQN ERDELESSLK  840
SVSLLLEQKQ NEATMVYNAW EKLAADRILT EVETEAKKLM IIELEEDISS ISQKLERSDE  900
YVSCLRVELE SKQGELKEVT TQMQERLRTS EADKTELVKQ VTSLSSERQD LLCFISELEN  960
GMSKQCDEDT KLMKALEKTV QHYDGFGKEN NNVGSPRLVM KHEDVAVEDR SPFRQLNHXT  1020
KVTVGSQCHT LLDMRDFTGA RSLVKMNKQL GKDWQKLDQV EAICDVIIAA ENRLPNGFMD  1080
YYGMLRATRF GPVVLDDFRR LMKLLDWRCN GLPSSQEAAQ YAYQAWSMLS KPVMKARYDL  1140
DISSPMVRGN NHVGVAQLGF PEGSSFVLKE QSPNQDIGRG NDNEVVVISD DDDDGDEDII  1200
TMARTAKVFK INGKRVKFIP LKKKKRKDSS TSNVRKTYNK TKKIVIFIFL ENLNLYCFWS  1260
LYLYTTSLHC FYRSLLSLGV AMVLLQQLEQ GMRPLSQRYN ATAYSATIGR NFFTNGASSS  1320
NLFTSRGYSA NAKPKSKTES KEMAAKKHSD AERRRRLRIN YQFEALRTIL PNLIKQDKAS  1380
VLGETVRYFK ELKKLVNEIP TTPSLEDSLR LGQCKNRDFA RVVFNCSDRE GLMSEVAESM  1440
KAADAKAVRA EMMTVGGRTK CVLFVQGVNG NEGLVKLKKA LKPVVNRKLE AENNNNAGSL  1500
LPQQQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1221	1226	KKKKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009109979.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013624787.1	0.0	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At4g38062
Swissprot	P0CB23	0.0	Y4862_ARATH; Uncharacterized protein At4g38062
TrEMBL	A0A3P6CBL7	0.0	A0A3P6CBL7_BRACM; Uncharacterized protein
STRING	Bra010633.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9592	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38070.1	0.0	bHLH family protein