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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009109894.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
RAV |
| Protein Properties |
Length: 359aa MW: 40279.4 Da PI: 9.7831 |
| Description |
RAV family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009109894.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 36.6 | 1.2e-11 | 67 | 113 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
kGV + +grW A+I++ ++r++lg+f +eeAa+ ++ a+++++g
XP_009109894.1 67 SKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAAASYDIAARRFRG 113
57887667.8*********3.....5*************************98 PP
|
| 2 | B3 | 105.5 | 2.7e-33 | 191 | 293 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
f+k+ tpsdv+k++rlv+pk++ae+h ++++++ + led++g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F++++
XP_009109894.1 191 FEKTVTPSDVGKLNRLVIPKQHAEKHfplpvtvTPSPTKGVLINLEDRTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCFERSSGP 285
99*****************************996677899**************************************************98778 PP
EE..EEEE CS
B3 89 efelvvkv 96
+++l++ +
XP_009109894.1 286 DRQLYIDW 293
88777765 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 359 aa
Download sequence Send
to blast |
MDYSCLDDNT SNTSETLSMS KKTPSPPLPL PPAMRLYRMG SGGSSVVLDL ENGVETESSR 60
KLPSSRSKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEEEA AASYDIAARR FRGRDAVTNF 120
KSPASDAESA FLEAHSKAEV VDMLRKHTYA DELRQSERKF LDGDGNGRKR CEFSKTTVTN 180
ENDGVSREVL FEKTVTPSDV GKLNRLVIPK QHAEKHFPLP VTVTPSPTKG VLINLEDRTG 240
KVWRFRYSYW NSSQSYVLTK GWSRFVKEKN LRAGDVVCFE RSSGPDRQLY IDWKVRSGIE 300
KITPVQNVVR LFGVNIFNAT TTNANTNDVV GESGSKKRFR EVDLFALGCS KKQAIINVL
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| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:18718758}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Choi D, et al.
iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
Mol Plant, 2014. 7(5): p. 792-813
[PMID:24380880] - Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
TEMPRANILLO is a regulator of juvenility in plants.
Sci Rep, 2014. 4: p. 3704
[PMID:24424565] - Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
RAV genes: regulation of floral induction and beyond.
Ann. Bot., 2014. 114(7): p. 1459-70
[PMID:24812253] - Marín-González E, et al.
SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
Plant Physiol., 2015. 169(2): p. 1214-24
[PMID:26243615] - Matías-Hernández L, et al.
TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
Plant Physiol., 2016. 170(3): p. 1624-39
[PMID:26802039]
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