PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CO-like

Protein Properties

Length: 395aa MW: 43881.4 Da PI: 7.3183

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009109881.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	30.4	8.1e-10	13	56	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r+C+++ +k++++fC ++ +lC++C ++ H+ H++v XP_009109881.1 13 ARTCDNCLKKQAHWFCAADEAFLCQSCDTSVHSAnllarrHERV 56 689*****************************667888888876 PP
2	CCT	69.1	1.2e-23	337	380	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eK+ktR F K+irYe+RK +Ae++pR+KGrFvk++ XP_009109881.1 337 REASVSRYREKKKTRSFTKTIRYEVRKLNAENKPRMKGRFVKRT 380 9*****************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	2.4E-11	11	58	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.893	11	58	IPR000315	B-box-type zinc finger
Pfam	PF00643	4.4E-9	13	56	IPR000315	B-box-type zinc finger
CDD	cd00021	1.05E-10	14	58	No hit	No description
Pfam	PF06203	1.1E-17	337	379	IPR010402	CCT domain
PROSITE profile	PS51017	15.299	337	379	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MKSLANCVRA KTARTCDNCL KKQAHWFCAA DEAFLCQSCD TSVHSANLLA RRHERVRLKD 60 STSPQQEAPT WYRGFTRKPR TPRGSGKRNN SSTFQDMVPE ISAEGQTDSS EVEGPLICQV 120 PVLGPMVVEP KIKFPTMRSG VMIDGHEDED KDESCLNGIF PTNMEVEDFA ADVETLLGHG 180 LDKESYTMEE LGLSNTEMFK KDEIEDKETK AMNMDIEIGD DDQGNRDGTL PFDLNYPQNA 240 YEEDAIKNVE SSGECVQAKE EKKKNVLMLS LDYDQVISAW GGQGLPWTSG GPPELDINIS 300 GSPVVSKVSK RDNGRKSRKK RRVGGCLPSS VVGDGGREAS VSRYREKKKT RSFTKTIRYE 360 VRKLNAENKP RMKGRFVKRT PLAASAGNSP LGVNN

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MKSLANCVRA KTARTCDNCL KKQAHWFCAA DEAFLCQSCD TSVHSANLLA RRHERVRLKD  60
STSPQQEAPT WYRGFTRKPR TPRGSGKRNN SSTFQDMVPE ISAEGQTDSS EVEGPLICQV  120
PVLGPMVVEP KIKFPTMRSG VMIDGHEDED KDESCLNGIF PTNMEVEDFA ADVETLLGHG  180
LDKESYTMEE LGLSNTEMFK KDEIEDKETK AMNMDIEIGD DDQGNRDGTL PFDLNYPQNA  240
YEEDAIKNVE SSGECVQAKE EKKKNVLMLS LDYDQVISAW GGQGLPWTSG GPPELDINIS  300
GSPVVSKVSK RDNGRKSRKK RRVGGCLPSS VVGDGGREAS VSRYREKKKT RSFTKTIRYE  360
VRKLNAENKP RMKGRFVKRT PLAASAGNSP LGVNN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009109881.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009109881.2	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
Swissprot	Q8RWD0	1e-172	COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBL	A0A397YDN1	0.0	A0A397YDN1_BRACM; Uncharacterized protein
STRING	Bo3g138650.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2467	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-169	B-box type zinc finger protein with CCT domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]