PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009109790.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 396aa MW: 43787.6 Da PI: 7.1589

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009109790.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.4	7.1e-05	277	315	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_009109790.1 277 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 315 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.827	265	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.76E-11	275	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.14E-5	275	319	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.6E-8	279	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MEPRRNCVSL SHNFNNEMLN TRDENNNNSS TSECMSLSNI HNHSLIQQQD FPLQWTHNES 60 SYHHHEGLHK IKEELSSATT SDHQQGMPRF TDMLNSPVIT NYLKINEHKD YTEKLLLNTI 120 SSGFPINGDY SNSLPSSSSS SSPSSQSHRG SFSQIYPSVN ISSLSESQRI SNTPRPFDMN 180 MQVLDGRLFE GNVFVPPLNS QEIRGNFTPF GLPFHHHLQQ TLHHPSSSPS HQMEIYSNEP 240 QASEGKRHNL MAPKAGETAS KKPRVESRSS CPPFKVRKEK LGDRIAALQQ LVSPFGKTDT 300 ASVLMEAIGY IKFLQSQIET LSVPYMRASR NRPGKTSQLG SIPQEGGEEE TRDLRSRGLC 360 LVPLSCMTYV TGDGGDGGGG VGSGFWPTPP GFGGGT

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MEPRRNCVSL SHNFNNEMLN TRDENNNNSS TSECMSLSNI HNHSLIQQQD FPLQWTHNES  60
SYHHHEGLHK IKEELSSATT SDHQQGMPRF TDMLNSPVIT NYLKINEHKD YTEKLLLNTI  120
SSGFPINGDY SNSLPSSSSS SSPSSQSHRG SFSQIYPSVN ISSLSESQRI SNTPRPFDMN  180
MQVLDGRLFE GNVFVPPLNS QEIRGNFTPF GLPFHHHLQQ TLHHPSSSPS HQMEIYSNEP  240
QASEGKRHNL MAPKAGETAS KKPRVESRSS CPPFKVRKEK LGDRIAALQQ LVSPFGKTDT  300
ASVLMEAIGY IKFLQSQIET LSVPYMRASR NRPGKTSQLG SIPQEGGEEE TRDLRSRGLC  360
LVPLSCMTYV TGDGGDGGGG VGSGFWPTPP GFGGGT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009109790.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189555	0.0	AC189555.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006E24, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009109790.1	0.0	PREDICTED: transcription factor bHLH110 isoform X4
Swissprot	Q9SFZ3	0.0	BH110_ARATH; Transcription factor bHLH110
TrEMBL	M4D372	0.0	M4D372_BRARP; Uncharacterized protein
STRING	Bra010925.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]