PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

XP_009109789.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 407aa MW: 44435.2 Da PI: 6.7942

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009109789.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.3	7.4e-05	288	326	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_009109789.1 288 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 326 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.827	276	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.19E-5	286	330	No hit	No description
SuperFamily	SSF47459	6.02E-11	286	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-8	290	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MDSANLHQLQ DQLQLVGSSS SSSSLDNNSH PSCYEASSVH QWSPGGISLN CVSLSHNFNN 60 EMLNTRDENN NNSSTSEWLH KIKEELSSAT TSDHQQGMPR FTDMLNSPVI TNYLKINEHK 120 DYTEKLLLNT ISSGFPINGD YSNSLPSSSS SSSPSSQSHR GSFSQIYPSV NISSLSESQR 180 ISNTPRPFDM NMQVLDGRLF EGNVFVPPLN SQEIRGNFTP FGLPFHHHLQ QTLHHPSSSP 240 SHQMEIYSNE PQASEGKRHN LMAPKAGETA SKKPRVESRS SCPPFKVRKE KLGDRIAALQ 300 QLVSPFGKTD TASVLMEAIG YIKFLQSQIE TLSVPYMRAS RNRPGKTSQL GSIPQEGGEE 360 ETRDLRSRGL CLVPLSCMTY VTGDGGDGGG GVGSGFWPTP PGFGGGT

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MDSANLHQLQ DQLQLVGSSS SSSSLDNNSH PSCYEASSVH QWSPGGISLN CVSLSHNFNN  60
EMLNTRDENN NNSSTSEWLH KIKEELSSAT TSDHQQGMPR FTDMLNSPVI TNYLKINEHK  120
DYTEKLLLNT ISSGFPINGD YSNSLPSSSS SSSPSSQSHR GSFSQIYPSV NISSLSESQR  180
ISNTPRPFDM NMQVLDGRLF EGNVFVPPLN SQEIRGNFTP FGLPFHHHLQ QTLHHPSSSP  240
SHQMEIYSNE PQASEGKRHN LMAPKAGETA SKKPRVESRS SCPPFKVRKE KLGDRIAALQ  300
QLVSPFGKTD TASVLMEAIG YIKFLQSQIE TLSVPYMRAS RNRPGKTSQL GSIPQEGGEE  360
ETRDLRSRGL CLVPLSCMTY VTGDGGDGGG GVGSGFWPTP PGFGGGT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009109789.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189555	0.0	AC189555.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006E24, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009109789.1	0.0	PREDICTED: transcription factor bHLH110 isoform X3
Swissprot	Q9SFZ3	0.0	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A397YER5	0.0	A0A397YER5_BRACM; Uncharacterized protein
STRING	Bra010925.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]