PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009109787.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 440aa MW: 48287.3 Da PI: 6.7085

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009109787.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.2	8.2e-05	321	359	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_009109787.1 321 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 359 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.827	309	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.67E-11	319	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.47E-5	319	363	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.9E-8	323	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MDSANLHQLQ DQLQLVGSSS SSSSLDNNSH PSCYEASSVH QWSPGGISLN CVSLSHNFNN 60 EMLNTRDENN NNSSTSECMS LSNIHNHSLI QQQDFPLQWT HNESSYHHHE GLHKIKEELS 120 SATTSDHQQG MPRFTDMLNS PVITNYLKIN EHKDYTEKLL LNTISSGFPI NGDYSNSLPS 180 SSSSSSPSSQ SHRGSFSQIY PSVNISSLSE SQRISNTPRP FDMNMQVLDG RLFEGNVFVP 240 PLNSQEIRGN FTPFGLPFHH HLQQTLHHPS SSPSHQMEIY SNEPQASEGK RHNLMAPKAG 300 ETASKKPRVE SRSSCPPFKV RKEKLGDRIA ALQQLVSPFG KTDTASVLME AIGYIKFLQS 360 QIETLSVPYM RASRNRPGKT SQLGSIPQEG GEEETRDLRS RGLCLVPLSC MTYVTGDGGD 420 GGGGVGSGFW PTPPGFGGGT

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MDSANLHQLQ DQLQLVGSSS SSSSLDNNSH PSCYEASSVH QWSPGGISLN CVSLSHNFNN  60
EMLNTRDENN NNSSTSECMS LSNIHNHSLI QQQDFPLQWT HNESSYHHHE GLHKIKEELS  120
SATTSDHQQG MPRFTDMLNS PVITNYLKIN EHKDYTEKLL LNTISSGFPI NGDYSNSLPS  180
SSSSSSPSSQ SHRGSFSQIY PSVNISSLSE SQRISNTPRP FDMNMQVLDG RLFEGNVFVP  240
PLNSQEIRGN FTPFGLPFHH HLQQTLHHPS SSPSHQMEIY SNEPQASEGK RHNLMAPKAG  300
ETASKKPRVE SRSSCPPFKV RKEKLGDRIA ALQQLVSPFG KTDTASVLME AIGYIKFLQS  360
QIETLSVPYM RASRNRPGKT SQLGSIPQEG GEEETRDLRS RGLCLVPLSC MTYVTGDGGD  420
GGGGVGSGFW PTPPGFGGGT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009109787.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189555	0.0	AC189555.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006E24, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009109787.1	0.0	PREDICTED: transcription factor bHLH110 isoform X1
Swissprot	Q9SFZ3	0.0	BH110_ARATH; Transcription factor bHLH110
TrEMBL	M4D372	0.0	M4D372_BRARP; Uncharacterized protein
STRING	Bra010925.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9351	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]