PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009109632.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 247aa    MW: 27038.4 Da    PI: 4.417
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009109632.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.4e-051942311254
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R +++++ +  Lr+++P       + ++ a++L +Av+Y+ksL
  XP_009109632.1 194 RKKKMKKMMGMLRKIVPGG-----EEMNTASVLDEAVQYLKSL 231
                     77899999999******85.....69***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.198182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-7194238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-7195241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MQNNQYPHFS DEMGDGNMNF PYSSSFDDLF PPCAKLPFHG VELQPSPVCP KNFVIFDQTY  60
DHSQVMYHPD LTPRLVNSGL ASTFQNEYAG GSYGYNYGQE VYGNYGGGQE VVSSSYQEDP  120
NEIDALLSTD EDDEGEEDGG DSEEVSTARN ASREYGNTSA ESCCSSYGYN SSRRKQSSSA  180
SAASSSNNDG KGGRKKKMKK MMGMLRKIVP GGEEMNTASV LDEAVQYLKS LKLEAQKLGV  240
GHFSNQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172198RRKQSSSASAASSSNNDGKGGRKKKMK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.214120.0bud| flower| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009109632.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893660.0AC189366.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB046G20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109633.20.0PREDICTED: transcription factor bHLH144
SwissprotQ9ASX91e-106BH144_ARATH; Transcription factor bHLH144
TrEMBLA0A397YCP50.0A0A397YCP5_BRACM; Uncharacterized protein
STRINGBra010806.1-P1e-173(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61951626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.22e-97bHLH family protein
Publications ? help Back to Top
  1. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]
  2. Cai Q, et al.
    The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis.
    Plant Cell Physiol., 2016. 57(8): p. 1583-92
    [PMID:27388339]
  3. Yamamoto M,Takahashi T
    Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis.
    Plant Signal Behav, 2017. 12(1): p. e1276685
    [PMID:28045577]