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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009109519.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 445aa MW: 49391.5 Da PI: 6.6169 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 28.3 | 4e-09 | 300 | 357 | 5 | 62 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr +r NR +A rs +RK +i eLe kv++L++e ++L + l+ + l+++ XP_009109519.1 300 KRVKRILANRQSAARSKERKMRYILELEHKVQTLQTEATTLSAQFTLLQRDMMGLTNQ 357 899***************************************9999888777666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.7E-18 | 296 | 360 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 2.7E-8 | 297 | 349 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.599 | 298 | 361 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.2E-11 | 300 | 357 | No hit | No description |
SuperFamily | SSF57959 | 2.25E-11 | 300 | 356 | No hit | No description |
CDD | cd14703 | 3.23E-22 | 301 | 350 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MGDTDTDMIH RLHSPFGKQP QQLQFSSDSA KRVGVPPTSP YSQIPTTRPQ PQGASHSRSI 60 SQPSSFFSFD SLPPLSPSPS NNNNNNNNQP SSLLPPPPFT RCNSDSSRVV LPPRKFHRRS 120 NSDIPTSIPP RPLERGESPD WSNHTPPFVK KESGEDMDDL FSAYMNLENI DALNSSEADD 180 NNSKNGESSR ASGTKTNGSD DTEGESSSVN YESGGDRNNS LKRRAGGEGD IAPTTRHYRS 240 VSVDSCFMEK MSFGEDSLKP PPTNSVDGGI EFKSGEFNAA EMKKIMANDK LAEMAVSDPK 300 RVKRILANRQ SAARSKERKM RYILELEHKV QTLQTEATTL SAQFTLLQRD MMGLTNQNNE 360 LKFRLQSMEQ QAQLRDALSE ALNGEVQRLK LAIGETSHNE SDRSKMQSLN AEMFQQLHIS 420 QLTQQPQSQQ NRNGTMSAKP ESNEL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009109519.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY080839 | 1e-154 | AY080839.1 Arabidopsis thaliana unknown protein (At4g38900) mRNA, complete cds. | |||
GenBank | AY150435 | 1e-154 | AY150435.1 Arabidopsis thaliana unknown protein (At4g38900) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009109518.1 | 0.0 | PREDICTED: transcription factor VIP1 | ||||
Refseq | XP_009109519.1 | 0.0 | PREDICTED: transcription factor VIP1 | ||||
Refseq | XP_009109520.1 | 0.0 | PREDICTED: transcription factor VIP1 | ||||
TrEMBL | M4D2L9 | 0.0 | M4D2L9_BRARP; Uncharacterized protein | ||||
STRING | Bra010722.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38900.3 | 0.0 | bZIP family protein |