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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009109426.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
HD-ZIP |
Protein Properties |
Length: 286aa MW: 32470.4 Da PI: 4.5923 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009109426.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 56 | 6.6e-18 | 58 | 110 | 3 | 55 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55
k++++ +q+++Le+ Fe ++++ e++++LA++lgL+ rqV vWFqNrRa++
XP_009109426.1 58 KKRRLRVDQVKALEKNFELENKIEPERKTQLAQELGLEPRQVAVWFQNRRARW 110
45578899********************************************9 PP
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2 | HD-ZIP_I/II | 122.6 | 2e-39 | 57 | 148 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekkrrl +qvk+LE++Fe e+k+eperK++la+eLgl+prqvavWFqnrRAR+ tkqlEkdy Lk++yd+l+++ ++L++++++L +++
XP_009109426.1 57 EKKRRLRVDQVKALEKNFELENKIEPERKTQLAQELGLEPRQVAVWFQNRRARWETKQLEKDYGLLKSQYDSLRHNFDSLRRDNDSLVLKIS 148
69************************************************************************************997776 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 286 aa
Download sequence Send
to blast |
MKRLSNSDSM CGLISNSTDE QNPRGYGHNF HSMLNGYEED GTTVEEYSGN HHMGQSEKKR 60 RLRVDQVKAL EKNFELENKI EPERKTQLAQ ELGLEPRQVA VWFQNRRARW ETKQLEKDYG 120 LLKSQYDSLR HNFDSLRRDN DSLVLKISEL KAKINGEEDN NNNSKVTAES DISAVKEENV 180 PSSPPEFIEH STGFDYRRSF TDLCDLLPNS TALDGGSSDS CDSSAETSSE NGRLTPPPTV 240 TGGNFLQFVK TEQMEDHDDF LSGEEACCFF SDEQPPSLHW YSASDH
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Widely expressed with a lower level in siliques. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}. |