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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009109336.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
bZIP |
| Protein Properties |
Length: 314aa MW: 33844.3 Da PI: 6.5257 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009109336.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 77.8 | 1.4e-24 | 222 | 284 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
e+elkr++rkq+NRe+ArrsR+RK+ae+e+L+++v++L++eN++L++el++l+ e++klk+e+
XP_009109336.1 222 ERELKRQKRKQSNRESARRSRLRKQAECEQLQQRVESLTSENQSLRDELQRLSGECEKLKTEN 284
89**********************************************************998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 314 aa
Download sequence Send
to blast |
MGTSEEKTPF KPSKPASSAQ DTPPTPYADW SNSMQSYYGG GATPSPFFPS PVGSPSPHPY 60
MWGAQHHMMP PYGTPVPYPA MYPPGTVYAH PGMPMPQASG PTNTETVKAQ APGKKPKGNL 120
KRKSGGGEKA PSGSGNDALS QSEESVTAGS SDENDDNANH QEQGSVRKPS FGQMLADAAS 180
SQSNTTGEIQ GSMPMKPLAP GTNLNMGMDL WSSQTGVAVK DERELKRQKR KQSNRESARR 240
SRLRKQAECE QLQQRVESLT SENQSLRDEL QRLSGECEKL KTENNTIQDE LVRVHGPEAV 300
ANLEQNADGS KDGE
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 238 | 244 | RRSRLRK |
| 2 | 238 | 245 | RRSRLRKQ |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Found in both light and dark grown leaves. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | X83921 | 0.0 | X83921.1 B.napus mRNA for G-Box binding factor 1B (partial). |
| Publications
? help Back to Top |
- Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
Mol Plant, 2013. 6(6): p. 1758-68
[PMID:24157607] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Karumuri S,Bandopadhyay R
In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
[PMID:25630103] - Smykowski A,Zimmermann P,Zentgraf U
CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
Plant Physiol., 2016. 170(2): p. 1164-7
[PMID:26826725] - Smykowski A,Fischer SM,Zentgraf U
Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
Plants (Basel), 2015. 4(3): p. 691-709
[PMID:27135347] - Giri MK, et al.
GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
Plant J., 2017. 91(5): p. 802-815
[PMID:28622438]
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