PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009109215.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 221aa    MW: 24574.8 Da    PI: 8.0841
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009109215.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.8e-094493253
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53
                    +  h  +Er+RR+++ + ++ Lr++lP       ++K   a+ +  Av +Ik+
  XP_009109215.1 44 KLLHRDIERQRRQEMATLYASLRSHLPLqY---IKGKRAVADHVNAAVGFIKD 93
                    6679************************66...99999999999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.18E-1139115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.2494294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-744116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-64493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.21E-64793No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDPYKNPNPK GYQRQRPFGS AGEGGSSGGS DMPHDIDDNK KKKKLLHRDI ERQRRQEMAT  60
LYASLRSHLP LQYIKGKRAV ADHVNAAVGF IKDTETRIKE LSARRDELSR EQTCQRSDPN  120
LARTGFELGK SDPASLIVQP CVNGFEVAVS SNSSGPDALP LSRVLEALQE LGLEVINSLT  180
TRVNERLMHT IQVEVNTFGC LDLAWLQQKL VEDLILSPGN I
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.302730.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009109215.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893096e-99AC189309.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034C07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109215.11e-164PREDICTED: transcription factor bHLH126-like
SwissprotQ9STJ61e-108BH126_ARATH; Transcription factor bHLH126
TrEMBLA0A397YBN91e-161A0A397YBN9_BRACM; Uncharacterized protein
TrEMBLM4D1W71e-161M4D1W7_BRARP; Uncharacterized protein
STRINGBra010467.1-P1e-162(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29682767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.11e-111bHLH family protein