PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009108913.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 350aa    MW: 39711.7 Da    PI: 10.4752
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009108913.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.31.2e-1721109598
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      ++ ++l ++ l++p +f++++g++++   +++l +e+grsW++ l ++k+  + +l++GW++F++ang++ g   +Fkl++ +++++v+++++
  XP_009108913.1  21 NVTVSSLHEDKLYVPVSFVRSNGLSNTY-CKIVLLNEKGRSWKLSLVHDKS--GSYLRQGWRSFCRANGINGGRY-TFKLVR-NSETPVIRLYQ 109
                     56778888999***********998765.59***************55544..4679**************9985.****98.55668988776 PP
2B3651.1e-20126216698
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++++l+++ l+l+++f++++g+k  +  +++l++ +g +W + l+ + + +++v+++GW++F++angLk++D + Fkl+g +++++v++++ 
  XP_009108913.1 126 LTPSSLRNDTLYLSRRFVNSNGLKG-KCCEMILKNDNGGTWCLVLRRNETNETTVISRGWRSFCHANGLKVRDPFKFKLVG-TREKPVLQFCP 216
                     478899999************9885.556****************98888889**************************99.77778999886 PP
3B370.71.8e-22250346199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f++ +++ ++ ks+ l+lp +f++ +g++k++  ++tl+ ++g  W v l+ ++k g+  l++GWk+F++a+g+k g+++v++l++++++++v+k
  XP_009108913.1 250 FVTLTVTQYSIKSNKLRLPLRFTRVNGINKAG--KITLMGQDGVNWMVHLTNENKCGKLRLGRGWKGFCEAHGVKIGESFVLELIREKDATPVLK 342
                     7888999********************99887..7***************99******************************************* PP

                     EE-S CS
              B3  96 vfrk 99 
                     +++k
  XP_009108913.1 343 FCNK 346
                     *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.46E-1713105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.9E-1913105IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-1217108No hitNo description
PROSITE profilePS5086312.92917111IPR003340B3 DNA binding domain
SMARTSM010192.0E-2418111IPR003340B3 DNA binding domain
PfamPF023622.5E-1620109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-18117217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-21118221IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.098121217IPR003340B3 DNA binding domain
SMARTSM010196.0E-27122218IPR003340B3 DNA binding domain
PfamPF023622.0E-19126216IPR003340B3 DNA binding domain
CDDcd100171.92E-19126216No hitNo description
Gene3DG3DSA:2.40.330.101.1E-21243346IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-20247344IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-16249335No hitNo description
PfamPF023626.2E-22250346IPR003340B3 DNA binding domain
PROSITE profilePS5086314.579250346IPR003340B3 DNA binding domain
SMARTSM010197.3E-27250347IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MKKRAKKNPR KKDSCSCFLA NVTVSSLHED KLYVPVSFVR SNGLSNTYCK IVLLNEKGRS  60
WKLSLVHDKS GSYLRQGWRS FCRANGINGG RYTFKLVRNS ETPVIRLYQA EHRHEDNTHS  120
YLVGSLTPSS LRNDTLYLSR RFVNSNGLKG KCCEMILKND NGGTWCLVLR RNETNETTVI  180
SRGWRSFCHA NGLKVRDPFK FKLVGTREKP VLQFCPSESN RNTRHVDCSE GDVHSLSKKE  240
ASSSPCQNPF VTLTVTQYSI KSNKLRLPLR FTRVNGINKA GKITLMGQDG VNWMVHLTNE  300
NKCGKLRLGR GWKGFCEAHG VKIGESFVLE LIREKDATPV LKFCNKVNCV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009108913.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108913.10.0PREDICTED: B3 domain-containing protein REM17-like
TrEMBLA0A078GD430.0A0A078GD43_BRANA; BnaA08g12400D protein
TrEMBLM4D1760.0M4D176_BRARP; Uncharacterized protein
STRINGBra010225.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.16e-80B3 family protein