PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009108579.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 268aa    MW: 30592 Da    PI: 6.4134
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009108579.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.7e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTteEd++l++ +   G  +W++ ++  g++R++k+c++rw +yl
   XP_009108579.1 14 KGPWTTEEDKKLINFILNNGHCCWRALPKLAGLRRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding47.83.3e-1571110546
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      + eE++l +d+++ +G++ W++Ia+++  gRt++++k++w++
   XP_009108579.1  71 SHEEEQLVIDLHAHMGNK-WSKIASRLR-GRTDNEIKNHWNT 110
                      89****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-20562IPR009057Homeodomain-like
PROSITE profilePS5129412.74961IPR017930Myb domain
SuperFamilySSF466897.76E-2611108IPR009057Homeodomain-like
SMARTSM007175.9E-111363IPR001005SANT/Myb domain
PfamPF002497.4E-141461IPR001005SANT/Myb domain
CDDcd001674.10E-81661No hitNo description
PROSITE profilePS5129425.72762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-2363117IPR009057Homeodomain-like
SMARTSM007179.2E-1366114IPR001005SANT/Myb domain
PfamPF002491.8E-1370110IPR001005SANT/Myb domain
CDDcd001673.67E-1071110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGRQPCCDKL GVKKGPWTTE EDKKLINFIL NNGHCCWRAL PKLAGLRRCG KSCRLRWTNY  60
LRPDLRRGLL SHEEEQLVID LHAHMGNKWS KIASRLRGRT DNEIKNHWNT RIKKKLVKMG  120
IDPVTHQPLN QDPNSTDNPK NSCSVSDDIS MVTKSSSTKN IETNGTRTED ESISTITDQN  180
SSMDNDNHQL SNIYNDEELF SYLWSDESTK AETPWSDSNY DVGGTLYHDN NVSCAGADFP  240
ICSPERINGV DWTFQDYCQD FGVHDFGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25141167108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in mature flowers and decreases upon pollination. {ECO:0000269|PubMed:15805488}.
UniprotTISSUE SPECIFICITY: Restricted to the petals, with the highest expression in the limb. {ECO:0000269|PubMed:15805488}.
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009108579.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108579.10.0PREDICTED: protein ODORANT1-like
SwissprotQ50EX63e-84ODO1_PETHY; Protein ODORANT1
TrEMBLM4DWE30.0M4DWE3_BRARP; Uncharacterized protein
STRINGBra020837.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.11e-147myb domain protein 85
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]