 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009108579.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
MYB |
| Protein Properties |
Length: 268aa MW: 30592 Da PI: 6.4134 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009108579.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 48.8 | 1.7e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WTteEd++l++ + G +W++ ++ g++R++k+c++rw +yl
XP_009108579.1 14 KGPWTTEEDKKLINFILNNGHCCWRALPKLAGLRRCGKSCRLRWTNYL 61
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 47.8 | 3.3e-15 | 71 | 110 | 5 | 46 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+ eE++l +d+++ +G++ W++Ia+++ gRt++++k++w++
XP_009108579.1 71 SHEEEQLVIDLHAHMGNK-WSKIASRLR-GRTDNEIKNHWNT 110
89****************.*********.***********97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 268 aa
Download sequence Send
to blast |
MGRQPCCDKL GVKKGPWTTE EDKKLINFIL NNGHCCWRAL PKLAGLRRCG KSCRLRWTNY 60
LRPDLRRGLL SHEEEQLVID LHAHMGNKWS KIASRLRGRT DNEIKNHWNT RIKKKLVKMG 120
IDPVTHQPLN QDPNSTDNPK NSCSVSDDIS MVTKSSSTKN IETNGTRTED ESISTITDQN 180
SSMDNDNHQL SNIYNDEELF SYLWSDESTK AETPWSDSNY DVGGTLYHDN NVSCAGADFP 240
ICSPERINGV DWTFQDYCQD FGVHDFGF
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in mature flowers and decreases upon pollination. {ECO:0000269|PubMed:15805488}. |
| Uniprot | TISSUE SPECIFICITY: Restricted to the petals, with the highest expression in the limb. {ECO:0000269|PubMed:15805488}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning. |
