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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009108526.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
B3 |
Protein Properties |
Length: 249aa MW: 28414.2 Da PI: 6.3045 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009108526.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 43.7 | 4.8e-14 | 9 | 93 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
ffk l ++sg + +p +f ++h g + +k +l++ s + Wev +++ +ltkGWkeF +a++L+ gD+v+Fk++g++ f +v
XP_009108526.1 9 FFKPL--LPGFQSG-VAIPLDFYSKHiqGAE--INKPWKLRSdASDQIWEVIR--EGR----TLTKGWKEFTEAHDLRIGDIVIFKHEGDMVF--HV 92
56666..5666676.99*********86433..4445666654999****988..555....4***********************9999988..76 PP
E CS
B3 95 k 95
+
XP_009108526.1 93 T 93
6 PP
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2 | B3 | 65.6 | 7.4e-21 | 130 | 223 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
+++++ + k + + lp + + ++g +++ k+++l +++g+sW+ ++ ++ ++g+y++++GW++F+++n+ gD +vF ++g+ ++++++ v+
XP_009108526.1 130 AEVTPTNQKDDKMFLPVEAM-RCGALNQQCKEVKLVNKEGKSWTARFGFSESDGAYYISRGWRKFCRDNRCTNGDLFVFNVVGDGTTTPLLCVCP 223
5678999999*********9.7755556779*****************************************************9999*999996 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 249 aa
Download sequence Send
to blast |
METPREPHFF KPLLPGFQSG VAIPLDFYSK HIQGAEINKP WKLRSDASDQ IWEVIREGRT 60 LTKGWKEFTE AHDLRIGDIV IFKHEGDMVF HVTPFGPSCC DIQYTHPHIV KEEADADDAP 120 TFSYDYCFLA EVTPTNQKDD KMFLPVEAMR CGALNQQCKE VKLVNKEGKS WTARFGFSES 180 DGAYYISRGW RKFCRDNRCT NGDLFVFNVV GDGTTTPLLC VCPERKECTE LLIKHFSRID 240 GSIASTSRN
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC155338 | 0.0 | AC155338.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH138P04, complete sequence. |
GenBank | AP011622 | 0.0 | AP011622.1 Brassica rapa subsp. pekinensis DNA, chromosome: Linkage group A5, BAC clone: KBrB038I07, complete sequence. |