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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009107972.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
NAC |
Protein Properties |
Length: 286aa MW: 32945.9 Da PI: 5.9237 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009107972.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 162.6 | 1.5e-50 | 6 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
lppGfrFhPtdeelv +yL+++ eg ++el e+i+ +d+yk++Pw+Lp k + +++ ew+fF++rd+ky++g+r nratksgyWkatgkd++++
XP_009107972.1 6 LPPGFRFHPTDEELVGYYLHRRNEGLQIEL-EIIPLMDLYKFDPWELPeKsFLPNRDMEWFFFCHRDRKYQNGSRINRATKSGYWKATGKDRKIV 99
79****************************.99**************95334556888************************************* PP
NAM 94 sk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
++ +++ +g++ktLvfy grap g +t+W mheyrl
XP_009107972.1 100 CQssssssTSSIIGCRKTLVFYLGRAPFGGRTEWAMHEYRL 140
*96666555555***************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 286 aa
Download sequence Send
to blast |
MARSYLPPGF RFHPTDEELV GYYLHRRNEG LQIELEIIPL MDLYKFDPWE LPEKSFLPNR 60 DMEWFFFCHR DRKYQNGSRI NRATKSGYWK ATGKDRKIVC QSSSSSSTSS IIGCRKTLVF 120 YLGRAPFGGR TEWAMHEYRL FDNDTSQGSL NFKGDFALCR VVKRNHEVTL KKCETSSLEV 180 PVPGEPQTNN VDIPCEARYI GKGSCDTSNT LRASPDFILG SSTKGHSQSQ TEDDSGFQEF 240 SLPEIGYPPE FFADLNFDWG MENSFPFVQY QEAHVNNEVI NYDVLR
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 6e-49 | 6 | 165 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-49 | 6 | 165 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-49 | 6 | 165 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-49 | 6 | 165 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-49 | 6 | 165 | 20 | 169 | NAC domain-containing protein 19 |
3swm_B | 8e-49 | 6 | 165 | 20 | 169 | NAC domain-containing protein 19 |
3swm_C | 8e-49 | 6 | 165 | 20 | 169 | NAC domain-containing protein 19 |
3swm_D | 8e-49 | 6 | 165 | 20 | 169 | NAC domain-containing protein 19 |
3swp_A | 8e-49 | 6 | 165 | 20 | 169 | NAC domain-containing protein 19 |
3swp_B | 8e-49 | 6 | 165 | 20 | 169 | NAC domain-containing protein 19 |
3swp_C | 8e-49 | 6 | 165 | 20 | 169 | NAC domain-containing protein 19 |
3swp_D | 8e-49 | 6 | 165 | 20 | 169 | NAC domain-containing protein 19 |
4dul_A | 6e-49 | 6 | 165 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 6e-49 | 6 | 165 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CP002684 | 1e-102 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
GenBank | F5D14 | 1e-102 | AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence. |