PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009107972.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 286aa MW: 32945.9 Da PI: 5.9237

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009107972.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.6	1.5e-50	6	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yL+++ eg ++el e+i+ +d+yk++Pw+Lp k + +++ ew+fF++rd+ky++g+r nratksgyWkatgkd++++ XP_009107972.1 6 LPPGFRFHPTDEELVGYYLHRRNEGLQIEL-EIIPLMDLYKFDPWELPeKsFLPNRDMEWFFFCHRDRKYQNGSRINRATKSGYWKATGKDRKIV 99 79**************************.99**********95334556888*********************************** PP NAM 94 sk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +++ +g++ktLvfy grap g +t+W mheyrl XP_009107972.1 100 CQssssssTSSIIGCRKTLVFYLGRAPFGGRTEWAMHEYRL 140 96666555555**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-57	3	164	IPR003441	NAC domain
PROSITE profile	PS51005	55.588	6	164	IPR003441	NAC domain
Pfam	PF02365	1.4E-27	7	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MARSYLPPGF RFHPTDEELV GYYLHRRNEG LQIELEIIPL MDLYKFDPWE LPEKSFLPNR 60 DMEWFFFCHR DRKYQNGSRI NRATKSGYWK ATGKDRKIVC QSSSSSSTSS IIGCRKTLVF 120 YLGRAPFGGR TEWAMHEYRL FDNDTSQGSL NFKGDFALCR VVKRNHEVTL KKCETSSLEV 180 PVPGEPQTNN VDIPCEARYI GKGSCDTSNT LRASPDFILG SSTKGHSQSQ TEDDSGFQEF 240 SLPEIGYPPE FFADLNFDWG MENSFPFVQY QEAHVNNEVI NYDVLR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-49	6	165	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-49	6	165	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-49	6	165	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-49	6	165	17	166	NO APICAL MERISTEM PROTEIN
3swm_A	8e-49	6	165	20	169	NAC domain-containing protein 19
3swm_B	8e-49	6	165	20	169	NAC domain-containing protein 19
3swm_C	8e-49	6	165	20	169	NAC domain-containing protein 19
3swm_D	8e-49	6	165	20	169	NAC domain-containing protein 19
3swp_A	8e-49	6	165	20	169	NAC domain-containing protein 19
3swp_B	8e-49	6	165	20	169	NAC domain-containing protein 19
3swp_C	8e-49	6	165	20	169	NAC domain-containing protein 19
3swp_D	8e-49	6	165	20	169	NAC domain-containing protein 19
4dul_A	6e-49	6	165	17	166	NAC domain-containing protein 19
4dul_B	6e-49	6	165	17	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00175	DAP	Transfer from AT1G32510	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009107972.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP002684	1e-102	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F5D14	1e-102	AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009107972.1	0.0	PREDICTED: NAC domain-containing protein 86 isoform X2
Swissprot	O49697	2e-87	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	M4F338	0.0	M4F338_BRARP; Uncharacterized protein
STRING	Bra035488.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32510.1	1e-153	NAC domain containing protein 11

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]