![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009107944.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 630aa MW: 70287.6 Da PI: 6.4752 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 91.9 | 6.5e-29 | 56 | 140 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laL+++r+em++++r++ lk+plWe+vs+k+ e g++r++k+Ckek+en++k++k++ke++++r++++ t+++f+qlea XP_009107944.1 56 RWPREETLALLRIRSEMDSTFRDATLKAPLWEHVSRKLLELGYKRNAKKCKEKFENVQKYHKRTKETRGGRHEGK--TYKFFSQLEA 140 8********************************************************************985555..6*******85 PP | |||||||
2 | trihelix | 104.2 | 9.6e-33 | 404 | 488 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+e+laLi++r+ me r++++ k+ lWee+s+ m++ g++r++k+Ckekwen+nk+ykk+ke++kkr +++ +tcpy+++l+ XP_009107944.1 404 RWPKEEILALINLRSGMEPRYQDNVPKGLLWEEISSSMKRMGYNRNAKRCKEKWENINKYYKKVKESNKKR-PQDAKTCPYYHRLD 488 8*********************************************************************8.99999*******97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.934 | 49 | 113 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.017 | 53 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 4.82E-25 | 55 | 120 | No hit | No description |
Pfam | PF13837 | 3.7E-19 | 55 | 141 | No hit | No description |
SMART | SM00717 | 4.3E-4 | 401 | 463 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-4 | 403 | 460 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 6.2E-22 | 403 | 488 | No hit | No description |
PROSITE profile | PS50090 | 7.189 | 403 | 461 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.04E-29 | 404 | 468 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 630 aa Download sequence Send to blast |
MEQGGGGGGG NEVVEEASPI SSRPPANMEE LMRFSAAADD GGGLGGGSSS SSSGNRWPRE 60 ETLALLRIRS EMDSTFRDAT LKAPLWEHVS RKLLELGYKR NAKKCKEKFE NVQKYHKRTK 120 ETRGGRHEGK TYKFFSQLEA LNTITSAPPS SLDVTPLSVA NPVQQPSSQF PVFSLTQTPP 180 PSQPLPPHTV SFTPNPPPPP SVDPPFPGGT FSSHSSSTAS GMGSDDDDDD MDVDHAGPSS 240 HKRKRENRGG KMMELFQGLV RQVMQKQAAM QRSFLEALEK REQERLAREE AWKRQEMSRL 300 AREHEIMTQE RAASASRDAA IISLIQKITG HTIQLPPSLS SQPSPPPPAA KRPSSQAVEP 360 PHSQPIMAIP QQQVLPPPPH QPPPQQQQQE MIMSSDQSLP SSSRWPKEEI LALINLRSGM 420 EPRYQDNVPK GLLWEEISSS MKRMGYNRNA KRCKEKWENI NKYYKKVKES NKKRPQDAKT 480 CPYYHRLDLL YRSKVLGSGA GSSTSALPQD QISTVQKQSP VPAMKPSQEG DVNVHQGEEP 540 REETPQGAEK PEDLVMRELM QQKQQQQEED SMIGEYEKIE ASHKYNMEEE EMDEELDEDE 600 KSAAYEIAFQ SPANRGGNGH SEPPFLTMVQ |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 98 | 106 | KRNAKKCKE |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in siliques, and, to a lower extent, in growing root hairs, leaves, stems, and flowers. Present in abaxial epidermal cells, predominantly in guard cells, pavement cells, and meristemoids. {ECO:0000269|PubMed:21169508, ECO:0000269|PubMed:9501260}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269|PubMed:19717615, ECO:0000269|PubMed:21169508}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009107944.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by water stress. {ECO:0000269|PubMed:21169508}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC021045 | 1e-140 | AC021045.2 Arabidopsis thaliana chromosome I BAC T9L6 genomic sequence, complete sequence. | |||
GenBank | AC027035 | 1e-140 | AC027035.5 Arabidopsis thaliana chromosome 1 BAC T16O9 genomic sequence, complete sequence. | |||
GenBank | AJ003215 | 1e-140 | AJ003215.1 Arabidopsis thaliana GTL1 gene. | |||
GenBank | AY140085 | 1e-140 | AY140085.1 Arabidopsis thaliana DNA-binding factor, putative (At1g33240) mRNA, complete cds. | |||
GenBank | BT008824 | 1e-140 | BT008824.1 Arabidopsis thaliana At1g33240 mRNA, complete cds. | |||
GenBank | CP002684 | 1e-140 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009107944.1 | 0.0 | PREDICTED: trihelix transcription factor GTL1-like isoform X1 | ||||
Swissprot | Q9C882 | 0.0 | GTL1_ARATH; Trihelix transcription factor GTL1 | ||||
TrEMBL | A0A397YAF1 | 0.0 | A0A397YAF1_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F6M1 | 0.0 | M4F6M1_BRARP; Uncharacterized protein | ||||
STRING | Bra036731.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6226 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G33240.1 | 1e-133 | GT-2-like 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|