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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009107934.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
NAC |
Protein Properties |
Length: 547aa MW: 60968.8 Da PI: 4.4054 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009107934.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 156.1 | 1.5e-48 | 13 | 139 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
+pGfrFhPtdeelv++yLk+k+ ++kl++ ++i vd+yk++P++Lp + +k+++++w++F++r++ky++ r+ r t++gyWkatgkd+ +
XP_009107934.1 13 APGFRFHPTDEELVMYYLKRKICKRKLRV-NAIGVVDVYKLDPEELPgQsVLKTGDRQWFYFTPRSRKYPNAARSGRCTATGYWKATGKDRVISY 106
69***************************.89**************96347788999************************************99 PP
NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
+++ vglkktLvfy+grap+g++tdWvmhey++
XP_009107934.1 107 -NSRSVGLKKTLVFYRGRAPNGQRTDWVMHEYTM 139
.999****************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 547 aa
Download sequence Send
to blast |
MADSCLRGGK FSAPGFRFHP TDEELVMYYL KRKICKRKLR VNAIGVVDVY KLDPEELPGQ 60 SVLKTGDRQW FYFTPRSRKY PNAARSGRCT ATGYWKATGK DRVISYNSRS VGLKKTLVFY 120 RGRAPNGQRT DWVMHEYTMD EDELGRCKNA KEYYALYKLF KKSGAGPKNG EEYGAPFQEE 180 EWADDDDNDN GDDIDVPVVR CEDNVSLFEP VNVRLHDLEE ILSGIPFAPG VPQTFTSVPQ 240 VNREEELQST LVNNSATEFL KPQETGDFLP NDMPSSYESI DVTSAPNNSV LVFEKEDYIE 300 MDDFLTPEHV ASSVENPAQL LNPGEYGDFN DFDQLFHDVS MSLDMEPILQ GTSADPLSSF 360 ADNTSDQEHP FPYQQFQDQT PENKLNNIMD PSPNLNQFSD DLWLEDDNQA FLFDQPQSVI 420 SGAFASPSSG VGPGSTNLVN GEDQEGVNGG GGTSPFSSAL WAFMDSIPST PASACEGPIN 480 RTFVRMSSFT RIKFSGIANG TPVTTTVMAK KRSRNRWFLL LSIVGALCAI FWVLMATVQA 540 SGRPVFS
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 31 | 38 | RKICKRKL |
2 | 510 | 515 | KRSRNR |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC232513 | 0.0 | AC232513.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB065E07, complete sequence. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Van Aken O, et al.
Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases. Plant Physiol., 2016. 171(3): p. 2150-65 [PMID:27208304] - Van Aken O,Ford E,Lister R,Huang S,Millar AH
Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance. Plant J., 2016. 88(4): p. 542-558 [PMID:27425258] - Hu Z, et al.
Mitochondrial Defects Confer Tolerance against Cellulose Deficiency. Plant Cell, 2016. 28(9): p. 2276-2290 [PMID:27543091] - Chi YH, et al.
The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis. Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647 [PMID:28088515] - Van Aken O,Pogson BJ
Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death. Cell Death Differ., 2017. 24(6): p. 955-960 [PMID:28498364] - Cheng P, et al.
The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis. Front Plant Sci, 2018. 9: p. 182 [PMID:29497438]
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