 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009107515.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
AP2 |
| Protein Properties |
Length: 579aa MW: 64018.7 Da PI: 6.0074 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009107515.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 48.3 | 2.5e-15 | 209 | 268 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g
XP_009107515.1 209 SIYRGVTRHRWTGRYEAHLWDnSCKrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 268
57*******************999975578446*************************98 PP
|
| 2 | AP2 | 51.1 | 3.2e-16 | 311 | 362 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g
XP_009107515.1 311 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 362
57****************988532...5************************998 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 579 aa
Download sequence Send
to blast |
MNNNWLGFSL SPYEQNHHRK DVCSSTTTTA VDVAGEYCYD PTAASDESSA IQTSFPSPFG 60
VVLDAFTRDN NSHSRDWDIN GSACNNIHND EQDGPKLENF LGRTTTIYNT NENVGDIDGS 120
GCYGGGDGGG GSLGLSMIKT WLRNQPVDNV DNQENGNGAK GLSLSMNSST SCDNNNYSSN 180
NLVAQGKTID DSVEATPKKT IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQTRK 240
GRQVYLGGYD KEEKAARAYD LAALKYWGTT TTTNFPMSEY EKEIEEMKHM TRQEYVASLR 300
RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF 360
RGLTAVTNFD MNRYNVKAIL ESPSLPIGSA AKRLKEANRP VPSMMMISNN VSESENNASG 420
WQNAAVQHHQ GVDLSLLQQH QERYNGYYYN GGNLSSESAR ACFKQEDDQH HFLSNTQSLM 480
TNIDHQSSVS DDSVTVCGNV VGYGGYQGFA APVNCDAYAA SEFDYNARNH YYFAQQQQTQ 540
HSPGGDFPAA MTNNVGSNMY YHGEGGGEVA PTFTVWNDN
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 119 | 131 | SGCYGGGDGGGGS |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}. |
| Uniprot | TISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF317905 | 0.0 | AF317905.1 Brassica napus AP2/EREBP transcription factor BABY BOOM2 (BBM2) mRNA, complete cds. |
