PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009107404.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 418aa    MW: 45942.2 Da    PI: 9.9237
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009107404.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.6e-05179201223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      Cp Cg+ F+  ++L++H+ + H
  XP_009107404.1 179 ACPQCGEIFPKLETLEHHQAVrH 201
                     6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280178201IPR007087Zinc finger, C2H2
PROSITE profilePS501578.517178206IPR007087Zinc finger, C2H2
SuperFamilySSF563998.15E-23203414No hitNo description
Gene3DG3DSA:3.90.228.102.3E-14206415IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MAPLPLIPNQ TQSQTRLFSS DPKKKKSRKK QTPLPQTQTQ TQTLKKKTVQ SSSSSWSQIK  60
NLLSCKQIEG PRVHEPSKIT SSSCGSSLCK FSDVIYGNAR VIHRSDHSPG SSNLGQDAGL  120
LTRKPVTRGS SATVRSNGCG AYTSYSSSKA MQFRKLSGCY ECHMIVDPCR YPVSPRICAC  180
PQCGEIFPKL ETLEHHQAVR HAVSELGPED SGRNIVDIIF KSSWLRKDSP IYNIERILKV  240
HNTQRTIQRF EDCRDAVKSH AHASTRKEPR SAADGNELLR FHCTTVSCSL GSRGSTSLCS  300
NFPGCRVCTI IRHGFHAKTL RLGGGANEIK GVRTTASSGR AHDASRCFDQ RRAMLVCRVI  360
AGRVRRVQSD AQEDENGSGS YDSVAGPAGV YTNLDDLVVF NPKAILPCFV VIYKVSEP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009107404.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895460.0AC189546.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004M10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107404.10.0PREDICTED: uncharacterized protein LOC103833057
TrEMBLM4DC810.0M4DC81_BRARP; Uncharacterized protein
STRINGBra014094.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-147C2H2-like zinc finger protein