PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009107320.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 303aa    MW: 33342.6 Da    PI: 9.3178
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009107320.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.53.2e-13132176347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r    +Rt+ q+ s+ qky
   XP_009107320.1 132 PWTQEEHRLFLLGLEKFGKGDWRSISRNYVITRTPTQVASHAQKY 176
                      7*****************************89************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.459361IPR017884SANT domain
SMARTSM007170.11459IPR001005SANT/Myb domain
CDDcd001674.29E-4757No hitNo description
SuperFamilySSF466894.02E-7864IPR009057Homeodomain-like
PROSITE profilePS5129417.259125181IPR017930Myb domain
SuperFamilySSF466892.8E-17126182IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17128179IPR006447Myb domain, plants
SMARTSM007176.6E-11129179IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-10130175IPR009057Homeodomain-like
PfamPF002491.0E-11132176IPR001005SANT/Myb domain
CDDcd001672.10E-10132177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MESVAVTWSR GEEKSFENAI AMHCVEEEIT EDQWMKMVSM VPTKSLQEVK NHYQMLLEDV  60
KAIESGQVPL PRYQRTGEEA AATSPANRDC HSSGGGGSTE KKPNHGVSGI SSSNGGGRSS  120
SKLEQERKKG IPWTQEEHRL FLLGLEKFGK GDWRSISRNY VITRTPTQVA SHAQKYFIRL  180
NSMNRDRRRS SIHDITSVNN QAPAVTGQQQ QQQQQVIKHR PAQPQPQPQP QHHTMAGLGM  240
YGGAPVGQPI IAPPDHMGSA VGTPVMLPPP MGTHHHIGVA PYAVPSYPVP SLPQQHPAPS  300
TMH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-128771177RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.260910.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009107320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107320.10.0PREDICTED: transcription factor DIVARICATA-like
TrEMBLM4DCF50.0M4DCF5_BRARP; Uncharacterized protein
STRINGBra014169.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103042535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.11e-131MYB family protein