PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 835aa MW: 91739.2 Da PI: 6.2755

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009107147.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.7	2e-18	17	75	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ XP_009107147.1 17 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75 5679*****************************************************97 PP
2	START	164.4	8.1e-52	161	366	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++ g a+ra+g+v +++ v+e+++d++ W + ++++++++v+ ++ g+++l XP_009107147.1 161 IAEETLAEFISKATGTAVEWVQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGLEPT-RVAEIVKDRPSWFRECRAVDVMNVLPTAngGTIELL 254 7899****************************************************.7777777777************9999** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE.-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd.seqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187 +++l+a+++l+p Rdf+ +Ry+ l++g++v++++S+ +++pp +++vRae+lpSg+li+p+++g+s +++v+h+dl++ +++++lr+l++s XP_009107147.1 255 YMQLYAPTTLAPpRDFWLLRYTSVLEDGSLVVCERSLKcGPSMPP-VQHFVRAEMLPSGYLIRPCDGGGSIIHIVDHMDLEACSVPEVLRPLYES 348 *********************************62678888.7******************************************** PP HHHHHHHHHHHHTXXXXX CS START 188 glaegaktwvatlqrqce 205 + ++kt++a+l+++++ XP_009107147.1 349 PKVLAQKTTMAALRQLKQ 366 ************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.24	12	76	IPR001356	Homeobox domain
SMART	SM00389	1.2E-15	14	80	IPR001356	Homeobox domain
CDD	cd00086	1.31E-16	17	77	No hit	No description
SuperFamily	SSF46689	1.03E-16	17	80	IPR009057	Homeodomain-like
Pfam	PF00046	5.8E-16	18	75	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.5E-18	19	75	IPR009057	Homeodomain-like
CDD	cd14686	1.14E-6	69	108	No hit	No description
PROSITE profile	PS50848	23.893	151	376	IPR002913	START domain
CDD	cd08875	4.05E-74	155	368	No hit	No description
Gene3D	G3DSA:3.30.530.20	2.5E-22	160	343	IPR023393	START-like domain
SuperFamily	SSF55961	1.79E-36	160	369	No hit	No description
SMART	SM00234	9.5E-39	160	367	IPR002913	START domain
Pfam	PF01852	2.8E-49	161	366	IPR002913	START domain
Pfam	PF08670	7.1E-52	692	834	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 835 aa Download sequence Send to blast
MAMSYKDGKM GCMDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK 60 QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VHENSYFRQH 120 TPNPTLPAKD TSCESVVTSG QHQLASQNPP RDASPAGLLS IAEETLAEFI SKATGTAVEW 180 VQMPGMKPGP DSIGIIAISH GCAGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVDVM 240 NVLPTANGGT IELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKCGPSMPPV 300 QHFVRAEMLP SGYLIRPCDG GGSIIHIVDH MDLEACSVPE VLRPLYESPK VLAQKTTMAA 360 LRQLKQIAQE SSQTNSSVNG WGRRPAALRA LSQRLSRGFN EAVNGFTDEG WSVIGDSMDD 420 VTITVNSSPD KLMGLNLTFS NGFAPVSNVV LCAKASMLLQ NVPPAILLRF LREHRSEWAD 480 NNIDAYLAAA VKVGPCSARV GGFGGQVILP LAHTIEHEEF MEVIKLEGLG QSPEDAIVPR 540 DIFLLQLCSG MDENALGTCA ELIFAPIDAS FADDAPLLPS GFRIIPLDST KQEASSPNRT 600 LDLASALEIG PAGTTKASTD QSGNSTCARS VMTIAFEFGI ESHMQEHVAS MARNYVRGII 660 ASVQRVALAL SPSHISSQVG LRTPLGTPEA QTLARWICQS YRCYMGVELL NLNSEGNESI 720 LKNLWHHTDA IICCSMKAMP VFTFANQAGL DMLETTLVSL QDITLEKIFD DSGRKTLCSE 780 FPQIMQQGFG SLQGGICISS MGRPVSYERA VAWKVLNEEE NTHCICFVFI NWSFV

Sequence ? help Back to Top

Protein Sequence Length: 835 aa Download sequence Send to blast

MAMSYKDGKM GCMDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VHENSYFRQH  120
TPNPTLPAKD TSCESVVTSG QHQLASQNPP RDASPAGLLS IAEETLAEFI SKATGTAVEW  180
VQMPGMKPGP DSIGIIAISH GCAGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVDVM  240
NVLPTANGGT IELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKCGPSMPPV  300
QHFVRAEMLP SGYLIRPCDG GGSIIHIVDH MDLEACSVPE VLRPLYESPK VLAQKTTMAA  360
LRQLKQIAQE SSQTNSSVNG WGRRPAALRA LSQRLSRGFN EAVNGFTDEG WSVIGDSMDD  420
VTITVNSSPD KLMGLNLTFS NGFAPVSNVV LCAKASMLLQ NVPPAILLRF LREHRSEWAD  480
NNIDAYLAAA VKVGPCSARV GGFGGQVILP LAHTIEHEEF MEVIKLEGLG QSPEDAIVPR  540
DIFLLQLCSG MDENALGTCA ELIFAPIDAS FADDAPLLPS GFRIIPLDST KQEASSPNRT  600
LDLASALEIG PAGTTKASTD QSGNSTCARS VMTIAFEFGI ESHMQEHVAS MARNYVRGII  660
ASVQRVALAL SPSHISSQVG LRTPLGTPEA QTLARWICQS YRCYMGVELL NLNSEGNESI  720
LKNLWHHTDA IICCSMKAMP VFTFANQAGL DMLETTLVSL QDITLEKIFD DSGRKTLCSE  780
FPQIMQQGFG SLQGGICISS MGRPVSYERA VAWKVLNEEE NTHCICFVFI NWSFV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.22406	0.0	leaf\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269\|PubMed:14701930, ECO:0000269\|PubMed:15705957}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009107147.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ439449	0.0	AJ439449.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein (ATHB-15 gene).
GenBank	AY060556	0.0	AY060556.1 Arabidopsis thaliana At1g52150/F5F19_21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009107147.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X1
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	M4DCU8	0.0	M4DCU8_BRARP; Uncharacterized protein
STRING	Bra014315.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2022	26	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.2	0.0	HD-ZIP family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]