 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009107033.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 256aa MW: 29833.5 Da PI: 9.2223 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009107033.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 90.1 | 1.1e-28 | 47 | 97 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien + rqvtfskRr g++KKA+ELSvLCda+va i+fs++g+lye+ss
XP_009107033.1 47 KKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAIVFSQNGRLYEFSS 97
68***********************************************96 PP
|
| 2 | K-box | 59.5 | 1.4e-20 | 126 | 209 | 14 | 97 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
e+l++e++ + k+i+ L+ +qR+l+G++L+s+s+ eLq++ q+eksl+ +Rs+K el+ +q+ +l+++e ++ +e ++Lr+k
XP_009107033.1 126 LEELKKEMDIMVKNIDLLEVQQRKLMGQGLGSCSVAELQEIDIQIEKSLRIVRSRKAELYADQLGKLKEMEIKVLDERRRLREK 209
68899*****************************************************************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009909 | Biological Process | regulation of flower development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 256 aa
Download sequence Send
to blast |
MHFSEIFVIG FYFPHQFYSS VLYFSCANYS SSVKYCRKMV RGKIEIKKIE NVTSRQVTFS 60
KRRSGLFKKA HELSVLCDAQ VAAIVFSQNG RLYEFSSSEM EKTIERYGDF SNEYFVLGRP 120
QVQPYLEELK KEMDIMVKNI DLLEVQQRKL MGQGLGSCSV AELQEIDIQI EKSLRIVRSR 180
KAELYADQLG KLKEMEIKVL DERRRLREKE IRERLLRPLL PVTLHTEKGE PEGGYRTKHS 240
SEVETDLFIG LPVARP
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | MADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. |
