PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009106859.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 246aa MW: 27788.4 Da PI: 9.7912

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009106859.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	86.7	2e-27	109	167	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+W+ YGqK ++g+++ r YY+Ct++gC vkk+ver a++ k ++itY g+H+h+ XP_009106859.1 109 LDDGYSWKNYGQKLIRGNPNVRRYYKCTFSGCDVKKHVERRADNAKSLVITYYGNHEHD 167 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.9E-28	96	169	IPR003657	WRKY domain
SuperFamily	SSF118290	8.63E-24	103	169	IPR003657	WRKY domain
PROSITE profile	PS50811	28.988	104	169	IPR003657	WRKY domain
SMART	SM00774	1.3E-27	109	168	IPR003657	WRKY domain
Pfam	PF03106	2.3E-21	110	167	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MLPWGDQLSL QKRIAPPSPD AIIGPPEMVE SSGGDHATMM ISNNGLPHQR MDVDQAPEDH 60 NIIDVLNVEP SSPKRRGNEV SLSNMIIASR TGRYDERVII QMKSEENNLD DGYSWKNYGQ 120 KLIRGNPNVR RYYKCTFSGC DVKKHVERRA DNAKSLVITY YGNHEHDAPV QRRKSYSLKK 180 RSGSPMFQDA SNRTPRLGRP PFSSSAFQVF PPSLEPHLGM TQINMNGLSK LPSLPANQMV 240 HRYTWG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-22	100	169	8	77	Probable WRKY transcription factor 4
2lex_A	2e-22	100	169	8	77	Probable WRKY transcription factor 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009106859.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM593143	0.0	KM593143.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY40) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009106856.1	1e-175	PREDICTED: probable WRKY transcription factor 10 isoform X1
Refseq	XP_009106858.1	1e-175	PREDICTED: probable WRKY transcription factor 10 isoform X3
TrEMBL	A0A3P6BM98	1e-152	A0A3P6BM98_BRACM; Uncharacterized protein
STRING	Bo3g185390.1	1e-145	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55600.1	5e-34	WRKY DNA-binding protein 10