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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_009106799.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
MYB |
| Protein Properties |
Length: 299aa MW: 34423.2 Da PI: 5.9478 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009106799.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 47.9 | 3.2e-15 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+W++ Ed+ l+ ++++G ++W++ ++ g+ R++k+c++rw +yl
XP_009106799.1 16 RGPWSPKEDLTLITFIQKHGHHNWRSLPKLAGLMRCGKSCRLRWINYL 63
89********************************************97 PP
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| 2 | Myb_DNA-binding | 48.7 | 1.8e-15 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++++eE++ +++ ++ lG++ W++Ia+ ++ gRt++++k+ w+++l
XP_009106799.1 69 RGNFSKEEEDAIIHFHQTLGNK-WSKIASFLP-GRTDNEIKNVWNTHL 114
89********************.*********.************986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009866 | Biological Process | induced systemic resistance, ethylene mediated signaling pathway |
| GO:0071281 | Biological Process | cellular response to iron ion |
| GO:0071732 | Biological Process | cellular response to nitric oxide |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 299 aa
Download sequence Send
to blast |
MGKGRAPCCD KSKVKRGPWS PKEDLTLITF IQKHGHHNWR SLPKLAGLMR CGKSCRLRWI 60
NYLRPDVKRG NFSKEEEDAI IHFHQTLGNK WSKIASFLPG RTDNEIKNVW NTHLKKRLFP 120
NSSSYSSISC PNDRPTEADQ KKNYAIVQEE RNSRDNESQD PPSSSHLHGK HMHTKPELHE 180
VNELHEIQLL LDHDDFDDIT SAFLQTTETL FPVQPLDSLL QTHTLTGFHN TGGTTQEATE 240
PQSFDHSQPE IPCGFEETNG EFDLWSQPSP NSEEFDEWLS FMDNQAYFDD FTLFGEVCL
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1a5j_A | 7e-26 | 16 | 118 | 7 | 108 | B-MYB |
| 1gv2_A | 6e-26 | 16 | 118 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
| 1h88_C | 2e-25 | 16 | 118 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 2e-25 | 16 | 118 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1mse_C | 7e-26 | 16 | 118 | 4 | 105 | C-Myb DNA-Binding Domain |
| 1msf_C | 7e-26 | 16 | 118 | 4 | 105 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Involved in metal ions homeostasis, including iron ions (Fe) acquisition, via the regulation of NAS4 and NAS2 genes expression. Necessary for plant survival in alkaline soil where iron availability is greatly restricted (PubMed:18088336, PubMed:24278034). Involved in the up-regulation of several biosynthesis genes of secondary metabolites involved in iron uptake under conditions of iron deficiency (PubMed:25138267). Triggers tolerance to nickel (Ni) and zinc (Zn) ions (PubMed:24278034). Required in the roots during early signaling steps of rhizobacteria-mediated (e.g. P.fluorescens WCS417r) and beneficial fungi-mediated (e.g. T.asperellum T34) broad-spectrum induced systemic resistance (ISR) against several pathogens (e.g. P.syringae pv tomato, H.parasitica, P.cucumerina, A.brassicicola and B.cinerea) and implying enhanced callose deposition (PubMed:18218967, PubMed:19121118). Required for the induction of some genes (e.g. BGLU42) upon rhizobacteria-mediated ISR (PubMed:25138267). {ECO:0000269|PubMed:18088336, ECO:0000269|PubMed:18218967, ECO:0000269|PubMed:19121118, ECO:0000269|PubMed:24278034, ECO:0000269|PubMed:25138267}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Accumulates strongly in the root stele when exposed to iron (Fe)-deficient conditions (PubMed:24278034). Accumulates upon potassium ion (K) depletion (PubMed:15489280). Induced in roots by zinc (Zn) and cadmium (Cd) ions (PubMed:18088336). Specifically activated in the roots upon colonization by nonpathogenic P.fluorescens WCS417r (PubMed:18218967). {ECO:0000269|PubMed:15489280, ECO:0000269|PubMed:18088336, ECO:0000269|PubMed:18218967, ECO:0000269|PubMed:24278034}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Zamioudis C, et al.
Rhizobacterial volatiles and photosynthesis-related signals coordinate MYB72 expression in Arabidopsis roots during onset of induced systemic resistance and iron-deficiency responses.
Plant J., 2015. 84(2): p. 309-22
[PMID:26307542] - Zhou C, et al.
Paenibacillus polymyxa BFKC01 enhances plant iron absorption via improved root systems and activated iron acquisition mechanisms.
Plant Physiol. Biochem., 2016. 105: p. 162-173
[PMID:27105423] - Wang C,Yao X,Yu D,Liang G
Fe-deficiency-induced expression of bHLH104 enhances Fe-deficiency tolerance of Arabidopsis thaliana.
Planta, 2017. 246(3): p. 421-431
[PMID:28451750] - Martínez-Medina A,Van Wees SCM,Pieterse CMJ
Airborne signals from Trichoderma fungi stimulate iron uptake responses in roots resulting in priming of jasmonic acid-dependent defences in shoots of Arabidopsis thaliana and Solanum lycopersicum.
Plant Cell Environ., 2017. 40(11): p. 2691-2705
[PMID:28667819] - Stringlis IA, et al.
MYB72-dependent coumarin exudation shapes root microbiome assembly to promote plant health.
Proc. Natl. Acad. Sci. U.S.A., 2018. 115(22): p. E5213-E5222
[PMID:29686086]
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