PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009106517.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 237aa MW: 25991.7 Da PI: 6.4273

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009106517.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30	1.1e-09	83	127	7	51
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 e+r NReA r++R++Kka+ + Le+++ L + N++L k+l++ XP_009106517.1 83 EKRPLGNREAVRKYREKKKAKAASLEDECSRLRGLNQQLVKRLQS 127 788899**********************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.0E-8	77	144	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.96E-7	82	127	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.0E-12	83	145	No hit	No description
Pfam	PF07716	2.1E-12	83	132	IPR004827	Basic-leucine zipper domain
CDD	cd14686	1.20E-11	83	136	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MEDGELEVFS SNGSIDSFFD GLLMDSHHHQ QGACTHTHTC NNSTGTEPHA HTCFHVHTKI 60 LPEDSDEKVS TDDTAESCGK NGEKRPLGNR EAVRKYREKK KAKAASLEDE CSRLRGLNQQ 120 LVKRLQSQGA LESEVSRLKC LLVDLRGRID GEIGSFPYQK PNIPSFSHLV NPCNVQCEDE 180 VYCLGDGFGV GNNRQEGGGD FDQLQCMTDQ NLNGSFNSAN VSASNKRKGG HRGPKAA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.5544	1e-114	root\| seed\| silique

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009106517.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009106517.1	1e-177	PREDICTED: basic leucine zipper 19
Swissprot	Q8VY76	1e-118	BZP19_ARATH; Basic leucine zipper 19
TrEMBL	A0A078ITA0	1e-172	A0A078ITA0_BRANA; BnaAnng11690D protein
TrEMBL	A0A398AK94	1e-172	A0A398AK94_BRACM; Uncharacterized protein
STRING	Bra011580.1-P	1e-171	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2036	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35040.1	1e-114	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Henriques AR,Farias DDR,Costa de Oliveira A Identification and characterization of the bZIP transcription factor involved in zinc homeostasis in cereals. Genet. Mol. Res., 2017. [PMID:28671251] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]