PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009106437.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 374aa MW: 42872.1 Da PI: 6.1418

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009106437.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.8	7.5e-11	97	139	4	50
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +k rr+++NReAAr+sR+RKka++++Lee +L++ ++L e XP_009106437.1 97 DKMKRRLAQNREAARKSRLRKKAYVQQLEESRLKLSQLEQEL----E 139 6899**************************888888777544....3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.9E-5	89	152	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.3E-8	96	141	No hit	No description
PROSITE profile	PS50217	9.381	96	140	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.5E-7	97	138	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.04E-6	98	140	No hit	No description
PROSITE pattern	PS00036	0	101	116	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.1E-30	180	254	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MMSSFSPTQL ASLRDMGIYE PFQQLVSWGN VYKSDINDHS PNTASSSVIQ VDARVDDHNN 60 IVKSNYNSSH NQIEAEPCSN DHQDVDDDDD DDGRIHDKMK RRLAQNREAA RKSRLRKKAY 120 VQQLEESRLK LSQLEQELER AKQQGLRVSN SIPSGSITNT RIATFEMEHS HWLEEQSRRV 180 SELRIALQAH ISDIELRMLV ESCLNHYANL FRMKSDAAKA DVFYLISGMW RTCTERFFQW 240 IGGFRPSELL NVVMPYLQPL TDQQVLEVRN LQQSSQQAED ALSQGIEKLQ QSLVENIVVD 300 AFSMDYPPQM AAALENLQAL EGFVNQADHL RQQTLQQMAK ILTTRQSARG LLALGEYLHR 360 LRALSSLWAA RPRD

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MMSSFSPTQL ASLRDMGIYE PFQQLVSWGN VYKSDINDHS PNTASSSVIQ VDARVDDHNN  60
IVKSNYNSSH NQIEAEPCSN DHQDVDDDDD DDGRIHDKMK RRLAQNREAA RKSRLRKKAY  120
VQQLEESRLK LSQLEQELER AKQQGLRVSN SIPSGSITNT RIATFEMEHS HWLEEQSRRV  180
SELRIALQAH ISDIELRMLV ESCLNHYANL FRMKSDAAKA DVFYLISGMW RTCTERFFQW  240
IGGFRPSELL NVVMPYLQPL TDQQVLEVRN LQQSSQQAED ALSQGIEKLQ QSLVENIVVD  300
AFSMDYPPQM AAALENLQAL EGFVNQADHL RQQTLQQMAK ILTTRQSARG LLALGEYLHR  360
LRALSSLWAA RPRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00247	DAP	Transfer from AT1G77920	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009106437.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009106436.1	0.0	PREDICTED: transcription factor TGA7
Swissprot	Q93ZE2	0.0	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A0D3D1G4	0.0	A0A0D3D1G4_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6H3T0	0.0	A0A3P6H3T0_BRAOL; Uncharacterized protein
STRING	Bo6g121590.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	0.0	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]