PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009106418.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 332aa    MW: 36641.8 Da    PI: 7.4071
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009106418.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.6e-10165212455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    ++   Ka +L + ++Y++sLq
  XP_009106418.1 165 SHSLAERARREKISERMTMLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 212
                     8**************************....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-17159230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.76E-11159216No hitNo description
Gene3DG3DSA:4.10.280.103.8E-18161230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.624161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-7165212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-10167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEKQTLKYLP LGQSDPFGNG NGNEGTIGDL LGRFCNPQES FSPGIRFPPY PGQFGSDRES  60
NKSSLLDPDS DRVPTTKPNS RKRKSIPVGN GKDSPASSSL TASHSKVSGE NVVSKDGKRS  120
KQDEAGSSKK VIDKCDDSKG DNKDDAKPTK DYIHVRARRG QATDSHSLAE RARREKISER  180
MTMLQDLVPG CNRITGKAVM LDEIINYVQS LQRQVEFLSM KLATVNPRME FNANAALSTE  240
MIQQGESLTQ SLYAMACSEQ RLPSGGYYSL TKNMPRFSDT HLPSSDGFVQ AETQGFWEND  300
LQSIVQMGFG DIQQQQSNNN CSEPTLQMKL EP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17984SRKRKS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00376DAPTransfer from AT3G23690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009106418.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106418.10.0PREDICTED: transcription factor bHLH77-like
SwissprotQ9LK480.0BH077_ARATH; Transcription factor bHLH77
TrEMBLM4EHS00.0M4EHS0_BRARP; Uncharacterized protein
STRINGBra028335.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74062039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]