PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009106292.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family FAR1
Protein Properties Length: 730aa    MW: 84432.3 Da    PI: 6.8509
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009106292.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.81.2e-2516101291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     +Y++YAk++GF + k +s++s+ ++e+++++f C ++g++++++++     ++ra+ ++gCka+++vk++ dgkw+v+++++eHnH+l p
  XP_009106292.1  16 YYKDYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGTKQQSDDA----INPRASPKIGCKASMHVKRRPDGKWYVYSFVEEHNHDLLP 101
                     8****************************************99887....9************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-2316101IPR004330FAR1 DNA binding domain
PfamPF105511.9E-25217308IPR018289MULE transposase domain
PfamPF044348.3E-10495529IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.868495531IPR007527Zinc finger, SWIM-type
SMARTSM005753.4E-8506533IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MLSQMEFETH EDAYTYYKDY AKSAGFGTAK LSSRRSRASK EFIDAKFSCI RYGTKQQSDD  60
AINPRASPKI GCKASMHVKR RPDGKWYVYS FVEEHNHDLL PEQSHFFRSH RIESSDPRLR  120
RNKKSNNPLA DCSKHLAVYH DLAFLDGGGY MRNQHDKGRR LAIESHDAQI LLEFLTRMQE  180
ENHKFFYAVD FNEDNVLRNV FWVDAKGIDD YKSFSDVVSF DTSYVVNKFK LPLVVFVGVN  240
HHVQPVLLGC ALVGDESVYS YVWLMESWLM AMGGLMPRVM LTDQDDGIKA AVSAVLPETR  300
HCYCLWYVLD RFPRNLDYWG MWQDAFLKKF FKCVYGSWSE EEFDRRWMKL IDKFHLRDVQ  360
WMRCLYDERS FWAPTFMRGV TFAGMSTRYR SESVNSMFDR YVQCETSLKD FLEGYGMMLE  420
DRYEEEAKAD FDAWHEAPEL KSPSPFEKQV LLVYTHVVFR RFQLEVLGAA ACHLTKESEG  480
GTTYSVKDFE DDQKYLVEWD ESKSDIYCSC RSFEYKGYLC RHAIVVLQMS GVFTIPINYV  540
LQRWTNAARN RHQISGNLEL VQCNIRRFND LCRRAIILGE EGSLSQESYD VAMFAMKEAF  600
KLCAIKVNTI EHPTIDHIHE DNQYGSTSKQ IGFEHNIQHA GNASGQGETI KEKRSSLNNT  660
SKKAKHVTES GNVGEGSQEG FQHVVAASRP FQAGLAAQFH NTIPAVFQNV IPTEFHNIQA  720
TNMHQNNPPG
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009106292.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106292.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4
SwissprotQ6NQJ70.0FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLA0A397YS510.0A0A397YS51_BRACM; Uncharacterized protein
STRINGBo6g120360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.10.0FAR1-related sequence 4
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]