PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TALE

Protein Properties

Length: 519aa MW: 59233.3 Da PI: 6.8067

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009106194.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.9	4.6e-10	357	394	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+++e+ LAk++gL+++qV +WF N R + XP_009106194.1 357 FEHflHPYPKESEKIMLAKQTGLSKNQVANWFINARVR 394 665559******************************88 PP
2	BELL	125.7	1.8e-40	220	291	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk+kLl++ +eVdkrY+qy++q+++v+ssFe+vag+g+akpYts+Al++iSrhFrcL+dai+eqi XP_009106194.1 220 ERQELQSKKNKLLTMADEVDKRYNQYYHQMEAVASSFEMVAGHGAAKPYTSVALNRISRHFRCLRDAIKEQI 291 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	7.6E-53	149	289	IPR006563	POX domain
Pfam	PF07526	6.5E-49	155	287	IPR006563	POX domain
PROSITE profile	PS50071	12.503	335	398	IPR001356	Homeobox domain
CDD	cd00086	1.81E-11	338	399	No hit	No description
SMART	SM00389	6.5E-10	338	402	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.7E-18	339	406	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-28	341	404	IPR009057	Homeodomain-like
Pfam	PF05920	6.4E-18	355	394	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
MAVYYPTSVG MQPLYQESIY LNEQQQQQQA SSSSAASFSG GGGGLDIPNS DGGVRHEMVF 60 IPPTNDVVVT GLNESSSNDL SFQGGGLSLS LGNQIQYHYQ NLSNQLNYSN DENGKSLSHH 120 HHQHQAEQLP STGYSNGVGY YNNYRYETSG FVSSVLRSRY LKPTQQLLDE VVSVRKDMKL 180 GESNKKTKNN NNDKGQDFTN GPNNNNTENE KFPEELSPQE RQELQSKKNK LLTMADEVDK 240 RYNQYYHQME AVASSFEMVA GHGAAKPYTS VALNRISRHF RCLRDAIKEQ IQVIRGKLGE 300 KETSEEQGER IPRLRYLDQR LRQQRALHQQ LGMVRPSWRP QRGLPENSVS ILRAWLFEHF 360 LHPYPKESEK IMLAKQTGLS KNQVANWFIN ARVRLWKPMI EEMYKEEFGD ASELLSNSNR 420 DKNKMQETSQ LKHEESSSSQ QHHQGNNNNN NNNIAYTSAV EENLVFTDPK PDRVTTTGDY 480 DSLMNYQGFG VDDYNRYIGL GNQQDGRFSN PHQLHDFVV

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

MAVYYPTSVG MQPLYQESIY LNEQQQQQQA SSSSAASFSG GGGGLDIPNS DGGVRHEMVF  60
IPPTNDVVVT GLNESSSNDL SFQGGGLSLS LGNQIQYHYQ NLSNQLNYSN DENGKSLSHH  120
HHQHQAEQLP STGYSNGVGY YNNYRYETSG FVSSVLRSRY LKPTQQLLDE VVSVRKDMKL  180
GESNKKTKNN NNDKGQDFTN GPNNNNTENE KFPEELSPQE RQELQSKKNK LLTMADEVDK  240
RYNQYYHQME AVASSFEMVA GHGAAKPYTS VALNRISRHF RCLRDAIKEQ IQVIRGKLGE  300
KETSEEQGER IPRLRYLDQR LRQQRALHQQ LGMVRPSWRP QRGLPENSVS ILRAWLFEHF  360
LHPYPKESEK IMLAKQTGLS KNQVANWFIN ARVRLWKPMI EEMYKEEFGD ASELLSNSNR  420
DKNKMQETSQ LKHEESSSSQ QHHQGNNNNN NNNIAYTSAV EENLVFTDPK PDRVTTTGDY  480
DSLMNYQGFG VDDYNRYIGL GNQQDGRFSN PHQLHDFVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	6e-16	344	402	5	63	Homeobox protein Meis2
3k2a_B	6e-16	344	402	5	63	Homeobox protein Meis2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.16178	0.0	bud\| leaf\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269\|PubMed:16513846}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009106194.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189493	0.0	AC189493.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084P16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009106194.1	0.0	PREDICTED: BEL1-like homeodomain protein 3
Swissprot	Q9FWS9	0.0	BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBL	M4DH68	0.0	M4DH68_BRARP; Uncharacterized protein
STRING	Bra015845.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3820	19	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75410.2	0.0	BEL1-like homeodomain 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]