PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009106138.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 243aa    MW: 27111.8 Da    PI: 9.7481
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009106138.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-1485129347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k+ G+g+Wk I++ + k+Rt  q+ s+ qky
   XP_009106138.1  85 PWTEEEHKLFLLGLKKVGKGDWKGISKNFVKTRTSTQVASHAQKY 129
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-1176130IPR009057Homeodomain-like
PROSITE profilePS5129418.12678134IPR017930Myb domain
SuperFamilySSF466892.17E-1780135IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-1781132IPR006447Myb domain, plants
SMARTSM007171.4E-1082132IPR001005SANT/Myb domain
CDDcd001674.34E-1085130No hitNo description
PfamPF002498.0E-1285129IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MADGSSCSSD SGCISREIML FGVRVVLDPM RKSVSLNNLS EYEQTEEIPK IIIAEDEKNK  60
TSSGYASADD AVPISSSRER KRGVPWTEEE HKLFLLGLKK VGKGDWKGIS KNFVKTRTST  120
QVASHAQKYF LRRSNLNRRR RRSSLFDMTT DTVMPMEKDQ MLMHENMSQP SSLVPEIKMH  180
PVMQIFPEFP VPASGGNASR NHLVPFTFQA RPEPISLSLT LASSNLNDPS SSRQSAFNTI  240
GVA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.173060.0bud| seed
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00236DAPTransfer from AT1G74840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009106138.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530763e-70AK353076.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-16-O16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106138.10.0PREDICTED: transcription factor MYB1R1
SwissprotQ2V9B01e-53MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLM4DHB31e-180M4DHB3_BRARP; Uncharacterized protein
STRINGBra015890.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24612669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.11e-79MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]