PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ERF

Protein Properties

Length: 251aa MW: 28599.8 Da PI: 4.8873

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009105895.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.6	6.3e-18	63	113	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+G+r+++ +grW+AeIrdp + r++lg+f tae+Aa+a++ +k+l+g XP_009105895.1 63 SEYRGIRRRP-WGRWAAEIRDPI----KgVRVWLGTFNTAEDAARAYDFEAKRLRG 113 569*****.******72....46*****************99999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	3.86E-22	63	122	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.933	64	121	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.7E-30	64	122	IPR001471	AP2/ERF domain
SMART	SM00380	3.3E-37	64	127	IPR001471	AP2/ERF domain
Pfam	PF00847	5.7E-11	64	113	IPR001471	AP2/ERF domain
CDD	cd00018	5.66E-30	65	122	No hit	No description
PRINTS	PR00367	2.8E-11	65	76	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-11	87	103	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009873	Biological Process	ethylene-activated signaling pathway
GO:0034059	Biological Process	response to anoxia
GO:0071456	Biological Process	cellular response to hypoxia
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MCGGAVISDY IAPRAGKPSW RRDDVVDLTL DDLEGDSQYY PWLGMKREDG TRRKKKTNKS 60 SSSEYRGIRR RPWGRWAAEI RDPIKGVRVW LGTFNTAEDA ARAYDFEAKR LRGVKAKLNF 120 PNESPASSSR KRKASSPPPT QRPQVRKIEE KREDVDVLGG GCFDFLWEEN NNADTSQVDT 180 QWLEDVIIMG DDAEKRQKGY YDCEGNVDEL LSFQNETECF LQTPFMEGGN CGFSTSLTSL 240 LDEVNVMDLW S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	5e-21	60	121	1	63	ATERF1
3gcc_A	5e-21	60	121	1	63	ATERF1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.27139	1e-72	root

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00230	DAP	Transfer from AT1G72360	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009105895.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189575	1e-69	AC189575.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011C10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009105895.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF073
Swissprot	Q8H0T5	7e-69	ERF73_ARATH; Ethylene-responsive transcription factor ERF073
TrEMBL	M4DHT6	0.0	M4DHT6_BRARP; Uncharacterized protein
STRING	Bra016063.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13737	16	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72360.3	1e-71	ERF family protein

Publications ? help Back to Top
Yang CY,Huang YC,Ou SL ERF73/HRE1 is involved in H2O2 production via hypoxia-inducible Rboh gene expression in hypoxia signaling. Protoplasma, 2017. 254(4): p. 1705-1714 [PMID:27995331]